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...taacaagttctcagcatacaatttgttgtagaatggtatattagtgttcatagtattgtcaatacaatgagtgttaaatttatttttatgccattttcagATTGATGCTTTGACAACCAAACGTGGTAAAGAAGGTGGTTGGGTTGTTGAACGACTATTGAACCAG
species | Glycine max |
transcript | GLYMA08G19920.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTTAGCCGTGCAAGGACATGTGCGCCTTGCATACNNNNNNNNGATGAG ATTGATGCTTTGACAACCAAACGTGGTAAAGAAGGTGGTTGGGTTGTTGAAEST: gi|27809133|gb|CB063555.1|CB063555
genomic: GTTTAGCCGTGCAAGGACATGTGCGCCTTGCATACTTTTTTTTGATGAGgtttgtggtt ... ccattttcagATTGATGCTTTGACAACCAAACGTGGTAAAGAAGGTGGTTGGGTTGTTGAA
EST: TGTTTAGCCGTGCAAGGACATGTGCGCCTTGCATACNNNNNNNNGATGAG ATTGATGCTTTGACAACCAAACGTGGTAAAGAAGGTGGTTGGGTTGTTGAAEST: gi|192294149|gb|FG986238.1|FG986238
genomic: TGTTTAGCCGTGCAAGGACATGTGCGCCTTGCATACTTTTTTTTGATGAGgtttgtggtt ... ccattttcagATTGATGCTTTGACAACCAAACGTGGTAAAGAAGGTGGTTGGGTTGTTGAA
EST: TGTTTAGCCGTGCAAGGACATGTGCGCCTTGTATACNNNNNNNNGATGAG ATTGATGCTTTGACAACCAAACGTGGTAAAGAAGGTGGTTGGGTTGTTGAAEST: gi|209722218|gb|BW659356.1|BW659356
genomic: TGTTTAGCCGTGCAAGGACATGTGCGCCTTGCATACTTTTTTTTGATGAGgtttgtggtt ... ccattttcagATTGATGCTTTGACAACCAAACGTGGTAAAGAAGGTGGTTGGGTTGTTGAA
EST: AGCCGTGCAAGGACATGTGCGCCTTGCATACNNNNNNNNGATGAG ATTGATGCTTTGACAACCAAACGTGGTAAAGAAGGTGGTTGGGTTGTTGAA
genomic: AGCCGTGCAAGGACATGTGCGCCTTGCATACTTTTTTTTGATGAGgtttgtggtt ... ccattttcagATTGATGCTTTGACAACCAAACGTGGTAAAGAAGGTGGTTGGGTTGTTGAA
gttcatagtattgtcaatacaatgagtgttaaatttatttttatgccattttcagATTGATGCTTTGACAACCAAACGTGGTAAAGAAGGTGGTTGGGTTGTTGAACGACTATTGAACCAG
ccattttc CT-rich tract
aatacaatgagtgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacaagttctcagcatacaatttgttgtagaatggtatattagtgttcatagtattgtcaatacaatgagtgttaaatttatttttatgccattttcagATTGATGCTTTGACAACCAAACGTGGTAAAGAAGGTGGTTGGGTTGTTGAACGACTATTGAACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - -gcataca
- - - - - - - - - - - -tgttgta
- - - - - - - - - - - - - - - - - - - - - agtgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagtgt