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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatatttattagtctttcggaatatgaaaaaacatagccattttaactgataacaacatcgataaatgatacagttatatgaaattgcagTTGCTTGTTGAGTTAGATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATTGGTGCTACAAATAG

Basic information

species Glycine max
transcript GLYMA08G19920.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21889596|gb|BQ742809.1|BQ742809
EST:     CCAAACGTGGTAAAGAAGGTGGTTGGGTTGTTGAACGACTATTGAACCAG                         TTGCTTGTTGAGTTAGATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATT
genomic: CCAAACGTGGTAAAGAAGGTGGTTGGGTTGTTGAACGACTATTGAACCAGgtaaaatatt ... gaaattgcagTTGCTTGTTGAGTTAGATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATT
EST: gi|298192475|gb|HO036557.1|HO036557
EST:     CCAAACCTGGTAAAGAAGGTGGTTGGGTTGTTGAACGACTATTGAACCAG                         TTGCTTGTTGAGTTAGATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATT
genomic: CCAAACGTGGTAAAGAAGGTGGTTGGGTTGTTGAACGACTATTGAACCAGgtaaaatatt ... gaaattgcagTTGCTTGTTGAGTTAGATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATT
EST: gi|27809133|gb|CB063555.1|CB063555
EST:     CCAAACGTGGTAAAGAAGGTGGTTGGGTTGTTGAACGACTATTGAACCAG                         TTGCTTGTTGAGTTAGATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATT
genomic: CCAAACGTGGTAAAGAAGGTGGTTGGGTTGTTGAACGACTATTGAACCAGgtaaaatatt ... gaaattgcagTTGCTTGTTGAGTTAGATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATT
EST: gi|57574066|gb|CX547041.1|CX547041
EST:     AAACGTGGTAAAGAAGGTGGTTGGGTTGTTGAACGACTATTGAACCAG                         TTGCTTGTTGAGTTAGATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATT
genomic: AAACGTGGTAAAGAAGGTGGTTGGGTTGTTGAACGACTATTGAACCAGgtaaaatatt ... gaaattgcagTTGCTTGTTGAGTTAGATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATT
EST: gi|192294149|gb|FG986238.1|FG986238
EST:     CCAAACGTGGTAAAGAAGGTGGTTGGGTTGTTGAACGACTATTGAACCAG                         TTGCTTGTTGAGTTAGATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATT
genomic: CCAAACGTGGTAAAGAAGGTGGTTGGGTTGTTGAACGACTATTGAACCAGgtaaaatatt ... gaaattgcagTTGCTTGTTGAGTTAGATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATT
EST: gi|209722218|gb|BW659356.1|BW659356
EST:     CCAAACGTGGTAAAGAAGGTGGTTGGGTTGTTGAACGACTATTGAACCAG                         TTGCTTGTTGAGTTAGATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATT
genomic: CCAAACGTGGTAAAGAAGGTGGTTGGGTTGTTGAACGACTATTGAACCAGgtaaaatatt ... gaaattgcagTTGCTTGTTGAGTTAGATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATT
EST: gi|298186613|gb|HO037246.1|HO037246
EST:     CCAAACCTGGTAAAGAAGGTGGTTGGGTTGTTGAACGACTATTGAACCAG                         TTGCTTGTTGAGTTAGATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATT
genomic: CCAAACGTGGTAAAGAAGGTGGTTGGGTTGTTGAACGACTATTGAACCAGgtaaaatatt ... gaaattgcagTTGCTTGTTGAGTTAGATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agccattttaactgataacaacatcgataaatgatacagttatatgaaattgcagTTGCTTGTTGAGTTAGATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATTGGTGCTACAAATAG
            tgataac  putative branch site (score: 2)
                                     agttatatgaaatt  TA-rich tract