1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacattttgttcaccatatgttttctctaattagttatttaacttcacatcacactgtattcaagtcagtttctcattttacagGCCTGAGGTGATGGATCGTGCTGTCCTACGGCCCGGAAGGTTTGGTAAACTTCTTTATGTTCCACTTCCAAGCCCAGATGAACGAGTTTTGATATTGAAA
species | Glycine max |
transcript | GLYMA08G19920.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATTGGTGCTACAAATAG GCCTGAGGTGATGGATCGTGCTGTCCTACGGCCCGGAAGGTTTGGTAAACTEST: gi|298192475|gb|HO036557.1|HO036557
genomic: GATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATTGGTGCTACAAATAGgtacattttg ... cattttacagGCCTGAGGTGATGGATCGTGCTGTCCTACGGCCCGGAAGGTTTGGTAAACT
EST: GATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATTGGTGCTACAAATAG GCCTGAGGTGATGGATCGTGCTGTCCTACGGCCCGGAAGGTTTGGTAAACTEST: gi|27809133|gb|CB063555.1|CB063555
genomic: GATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATTGGTGCTACAAATAGgtacattttg ... cattttacagGCCTGAGGTGATGGATCGTGCTGTCCTACGGCCCGGAAGGTTTGGTAAACT
EST: GATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATTGGTGCTACAAATAG GCCTGAGGTGATGGATCGTGCTGTCCTACGGCCCGGAAGGTTTGGTAAACTEST: gi|57574066|gb|CX547041.1|CX547041
genomic: GATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATTGGTGCTACAAATAGgtacattttg ... cattttacagGCCTGAGGTGATGGATCGTGCTGTCCTACGGCCCGGAAGGTTTGGTAAACT
EST: GATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATTGGTGCTACAAATAG GCCTGAGGTGATGGATCGTGCTGTCCTACGGCCCGGAAGGTTTGGTAAACTEST: gi|192294149|gb|FG986238.1|FG986238
genomic: GATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATTGGTGCTACAAATAGgtacattttg ... cattttacagGCCTGAGGTGATGGATCGTGCTGTCCTACGGCCCGGAAGGTTTGGTAAACT
EST: GATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATTGGTGCTACAAATAG GCCTGAGGTGATGGATCGTGCTGTCCTACGGCCCGGAAGGTTTGGTAAACTEST: gi|209722218|gb|BW659356.1|BW659356
genomic: GATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATTGGTGCTACAAATAGgtacattttg ... cattttacagGCCTGAGGTGATGGATCGTGCTGTCCTACGGCCCGGAAGGTTTGGTAAACT
EST: GATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATTGGTGCTACAAATAG GCCTGAGGTGATGGATCGTGCTGTCCTACGGCCCGGAAGGTTTGGTAAACTEST: gi|298186613|gb|HO037246.1|HO037246
genomic: GATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATTGGTGCTACAAATAGgtacattttg ... cattttacagGCCTGAGGTGATGGATCGTGCTGTCCTACGGCCCGGAAGGTTTGGTAAACT
EST: GATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATTGGTGCTACAAATAG GCCTGAGGTGATGGATCGTGCTGTCCTACGGCCCGGAAGGTTTGGTAAACT
genomic: GATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATTGGTGCTACAAATAGgtacattttg ... cattttacagGCCTGAGGTGATGGATCGTGCTGTCCTACGGCCCGGAAGGTTTGGTAAACT
attagttatttaacttcacatcacactgtattcaagtcagtttctcattttacagGCCTGAGGTGATGGATCGTGCTGTCCTACGGCCCGGAAGGTTTGGTAAACTTCTTTATGTTCCACTTCCAAGCCCAGATGAACGAGTTTTGATATTGAAA
atttaac putative branch site (score: 3)
tttctcatttt putative PPT
ttatttaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacattttgttcaccatatgttttctctaattagttatttaacttcacatcacactgtattcaagtcagtttctcattttacagGCCTGAGGTGATGGATCGTGCTGTCCTACGGCCCGGAAGGTTTGGTAAACTTCTTTATGTTCCACTTCCAAGCCCAGATGAACGAGTTTTGATATTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG