1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGAGACGGGATTTTTGCTTTATGGACCTCCTGGGTGTGGTAAAACACTGATTGCCAAAGCTGTTGCCAATGAGGCAGGGGCTACTTTTATTCATATTAAGgtcagtcatttactccacccttttctcattagttttggtattgtcttgttttgaataaatcatttttaaatgattaaattgcttttgttggatttttag
species | Glycine max |
transcript | GLYMA08G19920.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGCCAAAGCTGTTGCCAATGAGGCAGGGGCTACTTTTATTCATATTAAG GGACCTGAACTTTTAEST: gi|27809133|gb|CB063555.1|CB063555
genomic: TTGCCAAAGCTGTTGCCAATGAGGCAGGGGCTACTTTTATTCATATTAAGgtcagtcatt ... ggatttttagGGACCTGAACTTTTA
EST: TTGCCAAAGCTGTTGCCAATGAGGCAGGGGCTACTTTTATTCATATTAAG GGACCTGAACTTTTAAATAAATATGTTGGAGAAAGTGAGCTTGCAGTTCGTEST: gi|192294149|gb|FG986238.1|FG986238
genomic: TTGCCAAAGCTGTTGCCAATGAGGCAGGGGCTACTTTTATTCATATTAAGgtcagtcatt ... ggatttttagGGACCTGAACTTTTAAATAAATATGTTGGAGAAAGTGAGCTTGCAGTTCGT
EST: TTGCCAAAGCTGTTGCCAATGAGGCAGGGGCTACTATTATTCATATTAAG GGACCTGAACTTTTAAATAAATATGTTGGAGAAAGTGAGCTTGCAGTTCGT
genomic: TTGCCAAAGCTGTTGCCAATGAGGCAGGGGCTACTTTTATTCATATTAAGgtcagtcatt ... ggatttttagGGACCTGAACTTTTAAATAAATATGTTGGAGAAAGTGAGCTTGCAGTTCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGACGGGATTTTTGCTTTATGGACCTCCTGGGTGTGGTAAAACACTGATTGCCAAAGCTGTTGCCAATGAGGCAGGGGCTACTTTTATTCATATTAAGgtcagtcatttactccacccttttctcattagttttggtattgtcttgttttgaataaatcatttttaaatgattaaattgcttttgttggatttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT