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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgactgaattatttgattctcctctaatgatattgtgtattattggatcttatgcaaaatttcattacttttattcaaaaatgcctactccatttttgtattggtccttctcaatttgtcttatatgatgtatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG

Basic information

species Glycine max
transcript GLYMA06G18110.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21675804|gb|BQ628155.1|BQ628155
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|16276402|gb|BI941840.1|BI941840
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|207839144|gb|GD809561.1|GD809561
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|16282203|gb|BI944890.1|BI944890
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|17963223|gb|BM269974.1|BM269974
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|24136619|gb|BU927129.1|BU927129
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|193347754|gb|FK310630.1|FK310630
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|193408917|gb|FK372823.1|FK372823
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|16277514|gb|BI942422.1|BI942422
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAACTTAAAAATGCTATCAA                         GGACGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|37997667|gb|CF809256.1|CF809256
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|20497911|gb|BQ272841.1|BQ272841
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|21637795|gb|BM107950.1|BM107950
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGANGAATCAGANGGCNAGTTGAAGGGAATTCTTGGTTACACTGAAGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGA
EST: gi|16279470|gb|BI943453.1|BI943453
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|31560882|gb|CD486720.1|CD486720
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|298189237|gb|HO037640.1|HO037640
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|33389382|gb|CA852589.1|CA852589
EST:     GCGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|15589601|gb|BI674217.1|BI674217
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|16281661|gb|BI944603.1|BI944603
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|16277472|gb|BI942399.1|BI942399
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|16280570|gb|BI944030.1|BI944030
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGG
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGG
EST: gi|16276722|gb|BI942010.1|BI942010
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|16280511|gb|BI944000.1|BI944000
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|21601131|gb|BQ611462.1|BQ611462
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|22523984|gb|BU082795.1|BU082795
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|17401445|gb|BM178227.1|BM178227
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|16278605|gb|BI942990.1|BI942990
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|24136374|gb|BU926884.1|BU926884
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|193345349|gb|FK312942.1|FK312942
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCGGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|16279550|gb|BI943494.1|BI943494
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|16280437|gb|BI943962.1|BI943962
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATNTCT-GGTTACACTGGAGAAT
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAAT-TCTTGGTTACACTGAAGA-T
EST: gi|254322211|gb|GR837625.1|GR837625
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|16278701|gb|BI943045.1|BI943045
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|16279498|gb|BI943467.1|BI943467
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|16278876|gb|BI943140.1|BI943140
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|298191818|gb|HO035900.1|HO035900
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAA
EST: gi|15815889|gb|BI788164.1|BI788164
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|16277350|gb|BI942334.1|BI942334
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|193590425|gb|FK544455.1|FK544455
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|193541020|gb|FK495678.1|FK495678
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|48574825|gb|CO036096.1|CO036096
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|17401792|gb|BM178574.1|BM178574
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|16283985|gb|BI945845.1|BI945845
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|15812351|gb|BI784626.1|BI784626
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|16278808|gb|BI943106.1|BI943106
EST:     AAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: AAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|21285771|gb|BQ473642.1|BQ473642
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|193631193|gb|FK584578.1|FK584578
EST:     GTGAGGCTGGAGAAAGAAGCCTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACA
EST: gi|27445931|gb|CA953054.1|CA953054
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|16278516|gb|BI942945.1|BI942945
EST:     CCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: CCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|16281890|gb|BI944722.1|BI944722
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|208076691|gb|GD875620.1|GD875620
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|27425391|gb|CA936911.1|CA936911
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|31459092|gb|CD401120.1|CD401120
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTNGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|208246744|gb|GE046260.1|GE046260
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|298197763|gb|HO039302.1|HO039302
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGAAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|16277007|gb|BI942155.1|BI942155
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|27808905|gb|CB063327.1|CB063327
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|15589743|gb|BI674359.1|BI674359
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|20498687|gb|BQ273617.1|BQ273617
EST:     TGAGGCTGGAGAAAGAAGCTTCCTACGATGCAAATTAAAA-TGCTATCAA                         GGAAGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: TGAGGCTGGAGAAAGAAGCTTCCTACGATG-AAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|193320886|gb|FK286897.1|FK286897
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCGGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|16279444|gb|BI943440.1|BI943440
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|21601528|gb|BQ611859.1|BQ611859
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|5342572|gb|AI794856.1|AI794856
EST:     TGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCATGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: TGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|19054169|gb|BM732836.1|BM732836
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: gi|254332667|gb|GR844037.1|GR844037
EST:     GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAA                         GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGT
genomic: GTGAGGCTGGAGAAAGAAGCTTCCTACGATGAAATTAAAAATGCTATCAAgtaatgactg ... tatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactccatttttgtattggtccttctcaatttgtcttatatgatgtatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG
                                             tatttctc  CT-rich tract
                                   ttatatgatgtattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatgactgaattatttgattctcctctaatgatattgtgtattattggatcttatgcaaaatttcattacttttattcaaaaatgcctactccatttttgtattggtccttctcaatttgtcttatatgatgtatttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG