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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcacctttaacattttcttgtatgtgatagtgggttagtgcgtcaataagttgttaatttggccaaaaatctaatcacccgaattttagatgctttattattattaattcagctggttctaataccttctttgtccccggttctgcag

Basic information

species Glycine max
transcript GLYMA06G18110.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G18110.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os04g40950.1 (Oryza sativa), 5'ss of exon 11
ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcacctttaacattttcttgtatgtgatagtgggttagtgcgtcaataagttgttaatttggccaaaaatctaatcacccgaattttagatgctttattattattaattcagctggttctaataccttctttgtccccggttctgcag
 ||||| || |||||||||||||| || |||||  | ||| | |||||||| |||||||| |||||||| |||||||| |||||||||||||||      || |     ||       | |  | ||   ||||| | |   |   | ||| || | ||  |    |||     ||    ||   | ||| || |                                                 
GTCAAGCATCTTTGATGCAAAGGCCGGTATTGCTCTCAATGACAACTTTGTTAAGCTTGTGTCTTGGTATGACAACGAATGGGGATACAGgtaatcatttctatgtgcattagaaagctatacttgttttttagttcatggttgtttggttcatatcgcgtagg--ctagctctcca---ttagaaagctatact-------------------------------------------------

upper sequence: GLYMA06G18110.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os02g38920.2 (Oryza sativa), 5'ss of exon 10
ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcacctttaacattttcttgtatgtgatagtgggttagtgcgtcaataagttgttaatttggccaaaaatctaatcacccgaattttagatgctttattattattaattcagctggttctaataccttctttgtccccggttctgcag
 || || || |||||||| |||||||| ||||| ||||   | |  || ||||||||||| || |||||||||||||| ||||||||||||| | ||     |   |||| |      ||| ||  |  ||||    |   |  |      | | ||   |||   |   |  | |  |||  ||                                                           
GTCCAGCATCTTTGATGCCAAGGCTGGCATTGCTTTGAGCGACACGTTCGTGAAGCTTGTGTCCTGGTACGACAACGAATGGGGATACAGgttagtgtgtgct--gcattatgaaa-gtgtaattctctgtta-catgctcacga-----cagtctgcttaaaccacattttcctctgattgcag-----------------------------------------------------------

upper sequence: GLYMA06G18110.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os08g03290.3 (Oryza sativa), 5'ss of exon 10
ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcacctttaacattttcttgtatgtgatagtgggttagtgcgtcaataagttgttaatttggccaaaaatctaatcacccgaattttagatgctttattattattaattcagctggttctaataccttctttgtccccggttctgcag
 || || || || || || ||||||||||||||  | ||  | |||||||| ||||||||  | |||||||||||||||||||| ||||||| |   ||| |  |          ||      || |      || |   | |   |    ||||||  |  |   || |||   |   ||| |  |  |||  |                                                 
GTCGAGCATCTTCGACGCCAAGGCTGGAATTGCTCTTAACGATAACTTTGTCAAGCTTGTCGCCTGGTACGACAACGAGTGGGGTTACAGgtgagc-cacttgca----------gttcaaactattaaccatgtacaatactccatgcccaatttgctctta---ctgatctttcttttttgaactatttt-ctgcag---------------------------------------------

upper sequence: GLYMA06G18110.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G071630_T01 (Zea mays), 5'ss of exon 11
ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatg--cacctttaacattttcttgtatgtgatagtgggttagtgcgtcaataagttgttaatttggccaaaaatctaatcacccgaattttagatgctttattattattaattcagctggttctaataccttctttgtccccggttctgcag
 || || || |||||||| |||||||| ||||| |||||    ||||||||||||||||| || |||||||||||||||||||||||||||| | |     ||| ||    |    ||  | |||    ||| | ||| |    | | ||  ||| |   ||     | |  ||       ||| ||                                                           
GTCTAGCATCTTTGATGCGAAGGCTGGCATTGCCTTGAACGGCAACTTTGTGAAGCTTGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagtagttgcctctacagatcatctgactttgaactagggcttgtgtgcacttcaatttctaaat---cctggtttattttccgtttcttttcag-----------------------------------------------------------

upper sequence: GLYMA06G18110.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G176307_T01 (Zea mays), 5'ss of exon 11
ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcacctttaacattttcttgt-atgtgatagtgggttagtgcgtcaataagttgttaatttggccaaaaatctaatcacccgaattttagatgctttattattattaattcagctggttctaataccttctttgtccccggttctgcag
 || || || |||||||| |||||||| ||||| |||||    ||||| |||||||| || || |||||||||||||||||||||||||||| | |   |   |  | ||  |   | || |||   ||     |      |  | |   |           ||||| ||||        || ||  |   || | |                                                
GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggctagttgccttcaccgattatctgactctgaccagg------aggagggcttctgcgcacttcaaaatttaat--------ttctatgtctcttttcag-----------------------------------------------

upper sequence: GLYMA06G18110.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S9_47V6.2 (Physcomitrella patens), 5'ss of exon 4
----------ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcacctttaacattttcttgtatgtgatagtgggttagtgcgtcaataagttgttaatttggccaaaaatctaatcacccgaattttagatgctttattattattaattcagctggttctaataccttctttgtccccggttctgcag
           || || ||||| ||| | || || ||| | || |||    | || ||||||||||| ||| | |||||||||||||||||||| ||||||| |   ||| |||  || |            | |||       | | |  | |||      |  ||   | |||  | ||     | |||||   |   || || ||    ||    ||     | | |  ||    ||    |||| |||||
GCGATAGCCGGTCCAGCATTTTCGATTCCAAAGCAGGATTCGCTTTGGCCGAAAATTTTGTGAAGCTCGTTGCGTGGTACGACAACGAGTGGGGTTACAGgtga--tcactttttccact------------aaagtc------ttcttttacaag------agatgtttagaaaatttattttggggattttgcgtatattgtt-ttgcgcatctttctcaccatgagagttttcccgt----ggttttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208189366|gb|GD985660.1|GD985660
EST:     ACGACAACGAGTGGGGATACAG                         CTCACGCGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: ACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|16281585|gb|BI944563.1|BI944563
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|21675804|gb|BQ628155.1|BQ628155
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|16282203|gb|BI944890.1|BI944890
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|193595149|gb|FK553882.1|FK553882
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAGCGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTT
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTT
EST: gi|208096076|gb|GD892484.1|GD892484
EST:     AACTTTGTGAAGCTTGTTTCTTAGGTAACGAACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AACTTTGTGAAGCTTGTTTCTT-GGT-ACG-ACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|16277514|gb|BI942422.1|BI942422
EST:     GAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCCTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|37997667|gb|CF809256.1|CF809256
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|208065406|gb|GD866332.1|GD866332
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|208324331|gb|GE125688.1|GE125688
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTAGACCAAGAAGTCTCTTTAA
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTT-G-CCAAGAAGTCTCTTTAA
EST: gi|31461381|gb|CD403409.1|CD403409
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|16279470|gb|BI943453.1|BI943453
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGAT
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGAT
EST: gi|298189237|gb|HO037640.1|HO037640
EST:     AAGAACTTTGTGAAGCGTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|33389382|gb|CA852589.1|CA852589
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|15589601|gb|BI674217.1|BI674217
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|16281661|gb|BI944603.1|BI944603
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|16277472|gb|BI942399.1|BI942399
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|16276722|gb|BI942010.1|BI942010
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|208247540|gb|GE047588.1|GE047588
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|21601131|gb|BQ611462.1|BQ611462
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|17401445|gb|BM178227.1|BM178227
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|24136374|gb|BU926884.1|BU926884
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTA
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTA
EST: gi|16279550|gb|BI943494.1|BI943494
EST:     AGAAACTT-GNGAAGCTTGTTTCTTGGTACGACAACNAGTGGGGATACAG                         CTCACGTGTCATTGAT
genomic: AGAA-CTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGAT
EST: gi|193701960|gb|FK635934.1|FK635934
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|254322211|gb|GR837625.1|GR837625
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCA-GAAGTCTCTTT
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTT
EST: gi|16278701|gb|BI943045.1|BI943045
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|16279498|gb|BI943467.1|BI943467
EST:     AAGAACTTTGTGAAGCTCGTT-CTTAGTACGACCACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTC
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTC
EST: gi|16278876|gb|BI943140.1|BI943140
EST:     AAGAACTGTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGT
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGT
EST: gi|15815889|gb|BI788164.1|BI788164
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|193695073|gb|FK633367.1|FK633367
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|16277350|gb|BI942334.1|BI942334
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGTGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCT
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCT
EST: gi|6746889|gb|AW317345.1|AW317345
EST:     GTTTCTTGGTTCGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: GTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|48574825|gb|CO036096.1|CO036096
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTATGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|16283985|gb|BI945845.1|BI945845
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|15812351|gb|BI784626.1|BI784626
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|16278808|gb|BI943106.1|BI943106
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|16278749|gb|BI943072.1|BI943072
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|21285771|gb|BQ473642.1|BQ473642
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|27445931|gb|CA953054.1|CA953054
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATT
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATT
EST: gi|16278516|gb|BI942945.1|BI942945
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|31459092|gb|CD401120.1|CD401120
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|298197763|gb|HO039302.1|HO039302
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|16277007|gb|BI942155.1|BI942155
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|207745651|gb|GD714983.1|GD714983
EST:     AGCTTGTTTCTTGGTTACGTACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AGCTTGTTTCTTGG-TACG-ACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|27808905|gb|CB063327.1|CB063327
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAA
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAA
EST: gi|16277307|gb|BI942312.1|BI942312
EST:     CTTTGTGAAGTTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCT
genomic: CTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCT
EST: gi|16279444|gb|BI943440.1|BI943440
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTGTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|21601528|gb|BQ611859.1|BQ611859
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGC
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGC
EST: gi|208186416|gb|GD982579.1|GD982579
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTATTCGTTGCCAAGAAGTCTCTTTAAGG
EST: gi|5342572|gb|AI794856.1|AI794856
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACTACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTTCTTGTA
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTTCTTGTA
EST: gi|19054169|gb|BM732836.1|BM732836
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGATCTT
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcac ... ggttctgcagCTCACGTGTCATTGATCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgcacctttaacattttcttgtatgtgatagtgggttagtgcgtcaataagttgttaatttggccaaaaatctaatcacccgaattttagatgctttattattattaattcagctggttctaataccttctttgtccccggttctgcag

- - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC