Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaattatggtaaaagctgaaaatttattttaacacaattgttgcctttttatgttgacaacctgacattattattcatttacctgttaaccattttttgtttaaaaaaatcattgttccag

Basic information

species Glycine max
transcript GLYMA06G18110.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16281585|gb|BI944563.1|BI944563
EST:     GGTTACACTGAAGATGATGTGGTCT-CACTGAC-TTATCGGCGATAGCA-                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|21675804|gb|BQ628155.1|BQ628155
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|207839144|gb|GD809561.1|GD809561
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTT-ATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|16282203|gb|BI944890.1|BI944890
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|193595149|gb|FK553882.1|FK553882
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|24136619|gb|BU927129.1|BU927129
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAA-TNTTG
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACT-TTG
EST: gi|193408917|gb|FK372823.1|FK372823
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATT
EST: gi|16277514|gb|BI942422.1|BI942422
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTATGATGCAAATGCTGGAATTGCATTGAATGAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|37997667|gb|CF809256.1|CF809256
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|208065406|gb|GD866332.1|GD866332
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|20497911|gb|BQ272841.1|BQ272841
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|16279470|gb|BI943453.1|BI943453
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTNTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|31560882|gb|CD486720.1|CD486720
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTG
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTG
EST: gi|298189237|gb|HO037640.1|HO037640
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|33389382|gb|CA852589.1|CA852589
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|15589601|gb|BI674217.1|BI674217
EST:     GTTACACTGAAGATGATGT-TTCTCTCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GTTACACTGAAGATGATGTGGTCTC-CACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|16281661|gb|BI944603.1|BI944603
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|16277472|gb|BI942399.1|BI942399
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTG
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTT-GATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTG
EST: gi|16276722|gb|BI942010.1|BI942010
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|208247540|gb|GE047588.1|GE047588
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|16280511|gb|BI944000.1|BI944000
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCCAAGGCTGGAATTGCATTGAATAAGAAACTT-G
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAA-CTTTG
EST: gi|21601131|gb|BQ611462.1|BQ611462
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|17401445|gb|BM178227.1|BM178227
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|16278605|gb|BI942990.1|BI942990
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|24136374|gb|BU926884.1|BU926884
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|193345349|gb|FK312942.1|FK312942
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|16279550|gb|BI943494.1|BI943494
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCANAGGCTGGAATTGCATTGAATAAGAAACTT-G
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAA-CTTTG
EST: gi|193701960|gb|FK635934.1|FK635934
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|254322211|gb|GR837625.1|GR837625
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|16278701|gb|BI943045.1|BI943045
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|16279498|gb|BI943467.1|BI943467
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCACAGGCTTGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|16278876|gb|BI943140.1|BI943140
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTGTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|15815889|gb|BI788164.1|BI788164
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|193695073|gb|FK633367.1|FK633367
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|16277350|gb|BI942334.1|BI942334
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|193590425|gb|FK544455.1|FK544455
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|193541020|gb|FK495678.1|FK495678
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|48574825|gb|CO036096.1|CO036096
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|17401792|gb|BM178574.1|BM178574
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTT
EST: gi|16283985|gb|BI945845.1|BI945845
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|15812351|gb|BI784626.1|BI784626
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|16278808|gb|BI943106.1|BI943106
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|16278749|gb|BI943072.1|BI943072
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|21285771|gb|BQ473642.1|BQ473642
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|208102481|gb|GD899658.1|GD899658
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGTATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTG
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTG-ATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTG
EST: gi|27445931|gb|CA953054.1|CA953054
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|16278516|gb|BI942945.1|BI942945
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|16281890|gb|BI944722.1|BI944722
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|208076691|gb|GD875620.1|GD875620
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTT
EST: gi|27425391|gb|CA936911.1|CA936911
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|31459092|gb|CD401120.1|CD401120
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTNATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|298197763|gb|HO039302.1|HO039302
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|16277007|gb|BI942155.1|BI942155
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTNTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|27808905|gb|CB063327.1|CB063327
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|20498687|gb|BQ273617.1|BQ273617
EST:     GTTACACTGAAGATGATGTGGGCTCCACTGACTTTATTCGG-GATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTTGCTTTGAA
genomic: GTTACACTGAAGATGATGTGGTCTCCACTGACTTTAT-CGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATT-GCATTGAA
EST: gi|193320886|gb|FK286897.1|FK286897
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGN
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|16279444|gb|BI943440.1|BI943440
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|21601528|gb|BQ611859.1|BQ611859
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|5342572|gb|AI794856.1|AI794856
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|19054169|gb|BM732836.1|BM732836
EST:     GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaattatggtaaaagctgaaaatttattttaacacaattgttgcctttttatgttgacaacctgacattattattcatttacctgttaaccattttttgtttaaaaaaatcattgttccag

- - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - AAGATG