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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcgctttgattttgcatttgagcagggccacttgatctatgggaaataataagaggctatattgttcttttaggaacaaccaccaagaggcatatgcatttgtgtatcatgtctatgtccacccaacatctggtttttaaatttgcattttcccctcttctgcagGTGCCATACCTTCATTGTTTTATTCACAGGAAATTAGCGGTTCACGACTTCCTTCAGCATAACCCTATTGTAGAG

Basic information

species Glycine max
transcript GLYMA04G39990.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17022334|gb|BM093368.1|BM093368
EST:     TATCAGATGGGATTTCTGAGGATCCTTTGTGCCATCTCCCACCTAGCAAG                         GTGCCATACCTTCATTGTTTTATTCACAGGAAATTAGCGGTTCACGACTTC
genomic: TATCAGATGGGATTTCTGAGGATCCTTTGTGCCATCTCCCACCTAGCAAGgtatgcgctt ... tcttctgcagGTGCCATACCTTCATTGTTTTATTCACAGGAAATTAGCGGTTCACGACTTC
EST: gi|298181941|gb|HO026116.1|HO026116
EST:     CTCCCACCTAGCAAG                         GTGCCATACCTTCATTGTTTTATTCACAGGAAATTAGCGGTTCACGACTTC
genomic: CTCCCACCTAGCAAGgtatgcgctt ... tcttctgcagGTGCCATACCTTCATTGTTTTATTCACAGGAAATTAGCGGTTCACGACTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctatgtccacccaacatctggtttttaaatttgcattttcccctcttctgcagGTGCCATACCTTCATTGTTTTATTCACAGGAAATTAGCGGTTCACGACTTCCTTCAGCATAACCCTATTGTAGAG
                               tttgcattttcccctc  CT-rich tract
                       tttttaaatttgcatt  TA-rich tract