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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcaatctcaaaattccaagagaaaaaaacaaaaccctaatcttcaattataatactaatatttctcaattttttgattaattaatggaacagGTTCCTCTTCTGACCCCTGCCACCATCCAATGGGTGAAGCCCAATACTCTCGTTCGGTTTCGCGGGATGATACAAGACATGCTCGGGAATGAATTTTACG

Basic information

species Glycine max
transcript GLYMA04G39990.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39990.1 (Glycine max), 3'ss of exon 1
lower sequence: AT2G40550.1 (Arabidopsis thaliana), 3'ss of exon 1
-gttcaatctcaaaattccaagagaaaaaaacaaaaccctaatcttcaattataatactaatatttctcaattttttgat-------taattaatggaacagGTTCCTCTTCTGACCCCTGCCACCATCCAATGGGTGAAGCCCAATACTCTCGTTCGGTTTCGCGGGATGATACAAGACATGCTCGGGAATGAATTTTACG
  || | |||    ||     |   ||             ||   ||  || | | |   || ||||| ||||    |||       |  ||  |  |  |||||||  ||||     |  | |  ||  | |||||| | ||||| ||||| ||||||||||| || |||||||| |||||||| ||||||||||| || |
gttttagtctatccatagattggttaatttgggttttttcaaggatctgttttgagat--atttttcttaattaaccgatagtgttttcttttgtctactagGTTCCAATTCTTGATTCGTCAAGTATTAAGTGGGTGCAACCCAAGACTCTTGTTCGGTTTCGTGGAATGATACAGGACATGCTTGGGAATGAATTCTATG

upper sequence: GLYMA04G39990.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv13s0067g02530.t01 (Vitis vinifera), 3'ss of exon 1
--gttcaatctcaaaattccaagagaaaaa----aacaaaaccctaatcttcaattataatactaatatttctcaattttttgattaattaatggaacagGTTCCTCTTCTGACCCCTGCCACCATCCAATGGGTGAAGCCCAATACTCTCGTTCGGTTTCGCGGGATGATACAAGACATGCTCGGGAATGAATTTTACG
  |  |  | | |||  ||||   |  ||     |  ||     | | ||    |    |  ||   | ||      ||| || || |  |||||   |||||||  | || |   || | |   || || ||||  |||| || || || |||||||| || || ||||||||||||||||| ||||||||| | || |
gtggcctttttgaaagatccacccggtaatttttatgaacttgttgaactggggtgtagagtctgtaagttgatctgtttatggttcaacaatggtgtagGTTCCAGTACTTAATTCTACAAATTTCAAACGGGTTCAGCCAAACACACTGGTTCGGTTCCGAGGAATGATACAAGACATGCTGGGGAATGAACTCTATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15815401|gb|BI787676.1|BI787676
EST:     TCTTACCCCTCTTCCAACACTTCCTCTCAGATCCGTCCAGACTCTCTCAG                         GTTCCTCTTCTGACCCCTGCCACCATCCAATGGGTGAAGCCCAATACTCTC
genomic: TCTTACCCCTCTTCCAACACTTCCTCTCAGATCCGTCCAGACTCTCTCAGgttcaatctc ... aatggaacagGTTCCTCTTCTGACCCCTGCCACCATCCAATGGGTGAAGCCCAATACTCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcttcaattataatactaatatttctcaattttttgattaattaatggaacagGTTCCTCTTCTGACCCCTGCCACCATCCAATGGGTGAAGCCCAATACTCTCGTTCGGTTTCGCGGGATGATACAAGACATGCTCGGGAATGAATTTTACG
       aattataatactaata  TA-rich tract