Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCTCTGAAGCTGTGACTGCAGAAGCTTTGGAGGCTTGGAGGTGGTATTTGGCCACTGTTAGACAGCTATCACACACTATTGAACCAGAAATGCAGAAGgtatgagtgtcgttggcactagtattcacgaacaagtgttcttctgggtcaagctagttgtgaataatttatttagccgttagcctacacatactcagca...

Basic information

species Glycine max
transcript GLYMA04G39990.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294723|gb|FG986572.1|FG986572
EST:     TGGCCACTGTTAGACAGCTATCACACACTATTGAACCAGAAATGCAGAAG                         GTGGTAGAAACTGATCTAGTTGCAGCAAGACAAGCAGACAGGAGCTTGAGC
genomic: TGGCCACTGTTAGACAGCTATCACACACTATTGAACCAGAAATGCAGAAGgtatgagtgt ... gtgttttcagGTGGTAGAAACTGATCTAGTTGCAGCAAGACAAGCAGACAGGAGCTTGAGC
EST: gi|22933040|gb|BU550179.1|BU550179
EST:     CCAGAAATGCAGAAG                         GTGGTAGAAACTGANNNAGTTGCAGCAAGACAAGCAGACAGGAGCTTGAGC
genomic: CCAGAAATGCAGAAGgtatgagtgt ... gtgttttcagGTGGTAGAAACTGATCTAGTTGCAGCAAGACAAGCAGACAGGAGCTTGAGC
EST: gi|5605823|gb|AI899921.1|AI899921
EST:     GGCCACTGTTAGACAGCTATCACACACTATTGAACCAGANATGCAGNAAG                         -TGGTAGANACTGATCTAGTTGCAGCAAGACAAGCAGACAGGAGCTTGAG
genomic: GGCCACTGTTAGACAGCTATCACACACTATTGAACCAGAAATGCAG-AAGgtatgagtgt ... gtgttttcagGTGGTAGAAACTGATCTAGTTGCAGCAAGACAAGCAGACAGGAGCTTGAG