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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTGGAGGACCAACAAGTTTATGGATGCTTCTCAATCTCTTACGGCTTCTTCGGCGGATATGCGAATCTGGGAACGTCGACTGCTTTATTGTGTTCCGgtgaggcatttggggttgctgttttctctattttctcacccatgttcagttttttgttgtataaatggttgatgattttggttaaattgtagaattttgaaggattagctttgtttatttgtatgtag

Basic information

species Glycine max
transcript GLYMA04G39990.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39990.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0067g02530.t01 (Vitis vinifera), 5'ss of exon 3
GGTGTGGAGGACCAACAAGTTTATGGATGCTTCTCAATCTCTTACGGCTTCTTCGGCGGATATGCGAATCTGGGAACGTCGACTGCTTTATTGTGTTCCGgtgaggcatttggggttgctgttttctctattttctcacccatgttcagttttttgttgtataaatggttgatgattttggttaaattgtagaattttgaaggattagctttgtttatttgtatgtag
    ||||| ||||||||||||||||||| |||||||| || || || ||||    | ||||||||| | ||||| || ||||| || || ||||| || |||||   ||| |      |   | |  |  || || ||     |  | | |||||    |||      | || | |||   ||| || |||   ||||   | ||   | | |||||          
AAATTGGAGAACCAACAAGTTTATGGATGTTTCTCAATTTCCTATGGGTTCTAGACCTGATATGCGAGTTTGGGAGCGCCGACTTCTATACTGTGTCCCTgtgagtttttttg------tagatcccatgctt-cttac-----tgtaatcttttgcaaaatatgcatgttataacttta--taagtt-tag---tttgcttgcttccatgtttttat----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15815401|gb|BI787676.1|BI787676
EST:     CTTCGGCGGATATGCGAATCTGGGAACGTCGACTGCTTTATTGTGTTCCG                         GTTCCGGGATTGAGTCCATGGACTCAAGTTTCAACTGAAGAATTTGGCCAT
genomic: CTTCGGCGGATATGCGAATCTGGGAACGTCGACTGCTTTATTGTGTTCCGgtgaggcatt ... ttgtatgtagGTTCCGGGATTGAGTCCATGGACTCAAGTTTCAACTGAAGAATTTGGCCAT