1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tagttgaaaccacctattagcttacccataacttctagtgcataattaaatgttatgatggagaatgcataacagcctttgcgcatttgcgtgttttcagGTGGTAGAAACTGATCTAGTTGCAGCAAGACAAGCAGACAGGAGCTTGAGCTCCCAAGACTTAAGCAG
species | Glycine max |
transcript | GLYMA04G39990.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGGCCACTGTTAGACAGCTATCACACACTATTGAACCAGAAATGCAGAAG GTGGTAGAAACTGATCTAGTTGCAGCAAGACAAGCAGACAGGAGCTTGAGCEST: gi|22933040|gb|BU550179.1|BU550179
genomic: TGGCCACTGTTAGACAGCTATCACACACTATTGAACCAGAAATGCAGAAGgtatgagtgt ... gtgttttcagGTGGTAGAAACTGATCTAGTTGCAGCAAGACAAGCAGACAGGAGCTTGAGC
EST: CCAGAAATGCAGAAG GTGGTAGAAACTGANNNAGTTGCAGCAAGACAAGCAGACAGGAGCTTGAGCEST: gi|5605823|gb|AI899921.1|AI899921
genomic: CCAGAAATGCAGAAGgtatgagtgt ... gtgttttcagGTGGTAGAAACTGATCTAGTTGCAGCAAGACAAGCAGACAGGAGCTTGAGC
EST: GGCCACTGTTAGACAGCTATCACACACTATTGAACCAGANATGCAGNAAG -TGGTAGANACTGATCTAGTTGCAGCAAGACAAGCAGACAGGAGCTTGAG
genomic: GGCCACTGTTAGACAGCTATCACACACTATTGAACCAGAAATGCAG-AAGgtatgagtgt ... gtgttttcagGTGGTAGAAACTGATCTAGTTGCAGCAAGACAAGCAGACAGGAGCTTGAG
ttaaatgttatgatggagaatgcataacagcctttgcgcatttgcgtgttttcagGTGGTAGAAACTGATCTAGTTGCAGCAAGACAAGCAGACAGGAGCTTGAGCTCCCAAGACTTAAGCAG
gcataac putative branch site (score: 3)
tgttttc putative PPT
ttatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagttgaaaccacctattagcttacccataacttctagtgcataattaaatgttatgatggagaatgcataacagcctttgcgcatttgcgtgttttcagGTGGTAGAAACTGATCTAGTTGCAGCAAGACAAGCAGACAGGAGCTTGAGCTCCCAAGACTTAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - -ccaccta
- - - - - - - - - - cttaccc
- - - - - - - - - - - - - - - -cttctag
- - - - - - - - - - - - - - - - - - - tgcataa
- - - - - - - - - - - - - - - - - - - - - - - - - tgttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatttg