Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTGCCACCATCCAATGGGTGAAGCCCAATACTCTCGTTCGGTTTCGCGGGATGATACAAGACATGCTCGGGAATGAATTTTACGTTGGCGCTTATAAGgttttcttttctatcgcgttgttaatttaaagattcgttacctcgagcattaggtttaatttaagggaaaatgttaaattttgttttgggtgtatgcttattgaag

Basic information

species Glycine max
transcript GLYMA04G39990.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39990.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G40550.1 (Arabidopsis thaliana), 5'ss of exon 2
CCCTGCCACCATCCAATGGGTGAAGCCCAATACTCTCGTTCGGTTTCGCGGGATGATACAAGACATGCTCGGGAATGAATTTTACGTTGGCGCTTATAAGgttttcttttctatcgcgttgttaatttaaagattcgttacctcgagcattaggtttaatttaagggaaaatgttaaattttgttttgggtgtatgcttattgaag
  |  | |  ||  | |||||| | ||||| ||||| ||||||||||| || |||||||| |||||||| ||||||||||| || | ||| ||||| |||||     | |   |    ||| |  |||          ||         | |   || || ||   | || ||||    | ||||||     | || |||      
TTCGTCAAGTATTAAGTGGGTGCAACCCAAGACTCTTGTTCGGTTTCGTGGAATGATACAGGACATGCTTGGGAATGAATTCTATGCTGGTGCTTACAAGgtaggaatatgactt---ttgatggttt------ctactaaagaagaattcaatctttatctatcagtaactgtt----tctgtttttacgttctgtttag-----

upper sequence: GLYMA04G39990.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0067g02530.t01 (Vitis vinifera), 5'ss of exon 2
CCCTGCCACCATCCAATGGGTGAAGCCCAATACTCTCGTTCGGTTTCGCGGGATGATACAAGACATGCTCGGGAATGAATTTTACGTTGGCGCTTATAAGgttttct-tttctatcgcgttgttaatttaaagattcgttacctcgagcattaggtttaatttaagggaaaatgttaaattttgttttgggtgtatgcttattgaag
  || | |   || || ||||  |||| || || || |||||||| || || ||||||||||||||||| ||||||||| | || |||||||  |||||||| || | |||||  ||  ||| ||| |  |  |    | || ||      | |||  | ||| ||| |      |||  | |    |   |  ||| || | |   
TTCTACAAATTTCAAACGGGTTCAGCCAAACACACTGGTTCGGTTCCGAGGAATGATACAAGACATGCTGGGGAATGAACTCTATGTTGGCGTATATAAGgtattttgtttctgacgtattggtaact--actaactatcacttcttttggttggtaaagtttgaggca-----ctaagctcttgccttttttaatggttttag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15815401|gb|BI787676.1|BI787676
EST:     GGATGATACAAGACATGCTCGGGAATGAATTTTACGTTGGCGCTTATAAG                         GATGGTTCGGTGTGGAGGACCAACAAGTTTATGGATGCTTCTCAATCTCTT
genomic: GGATGATACAAGACATGCTCGGGAATGAATTTTACGTTGGCGCTTATAAGgttttctttt ... cttattgaagGATGGTTCGGTGTGGAGGACCAACAAGTTTATGGATGCTTCTCAATCTCTT