1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agtcctggggggagtggggagatccaccgttgagattgatcgagttctttttaattatgttcactggtttcaagattttaatttttcttttctcatgcagATACCAACCTCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGATGAGGAAGGAG
species | Glycine max |
transcript | GLYMA04G39480.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCACAGG ATACCAACCTCCTCTTC-AGTTGATCAAGTAAAACCTTTAAATGAATATGAEST: gi|19936967|gb|BQ081088.1|BQ081088
genomic: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCACAGGgtaagaatat ... tctcatgcagATACCAACCTCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGA
EST: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCACAGG ATACCAACCTCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAEST: gi|254331474|gb|GR843431.1|GR843431
genomic: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCACAGGgtaagaatat ... tctcatgcagATACCAACCTCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGA
EST: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCACAGG ATACCAACCTCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAEST: gi|18730125|gb|BM525698.1|BM525698
genomic: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCACAGGgtaagaatat ... tctcatgcagATACCAACCTCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGA
EST: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCACAGG ATACCAACCTCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAEST: gi|17962956|gb|BM269711.1|BM269711
genomic: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCACAGGgtaagaatat ... tctcatgcagATACCAACCTCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGA
EST: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCACAGG ATACCAACCTCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGA
genomic: ATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCACAGGgtaagaatat ... tctcatgcagATACCAACCTCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGA
tctttttaattatgttcactggtttcaagattttaatttttcttttctcatgcagATACCAACCTCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGATGAGGAAGGAG
ttttaat putative branch site (score: 3)
ttttaatttttctttt CT-rich tract
tttcaagattttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtcctggggggagtggggagatccaccgttgagattgatcgagttctttttaattatgttcactggtttcaagattttaatttttcttttctcatgcagATACCAACCTCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGATGAGGAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - ctggggg
- - - - - -gagtggg
- - - - - - - - - - - tccaccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actggtt