1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgggaggatcaatatctttatggaatatgttggcctgcatttgttcatcttatgttcatgtgttgtgatggttctgttccttgtttcagAGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCC
species | Glycine max |
transcript | GLYMA04G39480.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAG AGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATAEST: gi|16280150|gb|BI943809.1|BI943809
genomic: CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAGgtgggaggat ... cttgtttcagAGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATA
EST: CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAG AGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATAEST: gi|19936967|gb|BQ081088.1|BQ081088
genomic: CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAGgtgggaggat ... cttgtttcagAGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATA
EST: CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAG AGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATAEST: gi|10235369|gb|BE804257.1|BE804257
genomic: CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAGgtgggaggat ... cttgtttcagAGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATA
EST: CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAG AGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATAEST: gi|254331474|gb|GR843431.1|GR843431
genomic: CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAGgtgggaggat ... cttgtttcagAGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATA
EST: CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAG AGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATAEST: gi|17962956|gb|BM269711.1|BM269711
genomic: CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAGgtgggaggat ... cttgtttcagAGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATA
EST: CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAG AGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATAEST: gi|7684754|gb|AW755402.1|AW755402
genomic: CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAGgtgggaggat ... cttgtttcagAGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATA
EST: CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAG AGAAGGATTGTTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATAT
genomic: CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAGgtgggaggat ... cttgtttcagAGAAGGATTGTT-GGTCTGCATCAAAACACCCAAATTGGATCAACTGATAT
ctgcatttgttcatcttatgttcatgtgttgtgatggttctgttccttgtttcagAGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCC
ttctgttccttgtttc CT-rich tract
atcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggaggatcaatatctttatggaatatgttggcctgcatttgttcatcttatgttcatgtgttgtgatggttctgttccttgtttcagAGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG