1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttctcccttttgtttttagtatgatccatccattcaagtatcaatttatctagaatcaactgatattttactatttttaacattttatcttgctctacagGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAG
species | Glycine max |
transcript | GLYMA04G39480.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCAAGGAAGGACGAGGAATTACATCACCTACGCCACCACTCTCCTTCAG GAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATEST: gi|16280150|gb|BI943809.1|BI943809
genomic: CTCAAGGAAGGACGAGGAATTACATCACCTACGCCACCACTCTCCTTCAGgttaccgtgc ... tgctctacagGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAAT
EST: CTCAAGGAAGGACGAGGAATTACATCACCTACGCCACCACTCTCCTTCAG GAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATEST: gi|19936967|gb|BQ081088.1|BQ081088
genomic: CTCAAGGAAGGACGAGGAATTACATCACCTACGCCACCACTCTCCTTCAGgttaccgtgc ... tgctctacagGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAAT
EST: CTCAAGGAAGGACGAGGAATTACATCACCTACGCCACCACTCTCCTTCAG GAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATEST: gi|10235369|gb|BE804257.1|BE804257
genomic: CTCAAGGAAGGACGAGGAATTACATCACCTACGCCACCACTCTCCTTCAGgttaccgtgc ... tgctctacagGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAAT
EST: CTCAAGGAAGGACGAGGAATTACATCACCTACGCCACCACTCTCCTTCAG GAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATEST: gi|254331474|gb|GR843431.1|GR843431
genomic: CTCAAGGAAGGACGAGGAATTACATCACCTACGCCACCACTCTCCTTCAGgttaccgtgc ... tgctctacagGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAAT
EST: CTCAAGGAAGGACGAGGAATTACATCACCTACGCCACCACTCTCCTTCAG GAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATEST: gi|8827115|gb|BE210845.1|BE210845
genomic: CTCAAGGAAGGACGAGGAATTACATCACCTACGCCACCACTCTCCTTCAGgttaccgtgc ... tgctctacagGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAAT
EST: TCAAGGAAGGACGAGGAATTACATCACCTTACGCC-CC-CTCTC-TT-AG GAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATEST: gi|15336844|gb|BI497500.1|BI497500
genomic: TCAAGGAAGGACGAGGAATTACATCACCT-ACGCCACCACTCTCCTTCAGgttaccgtgc ... tgctctacagGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAAT
EST: CT-ATTGAAGGACGAGGAATTACATCACCTACGCCACCACTCTCCTTCAG GAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATEST: gi|17962956|gb|BM269711.1|BM269711
genomic: CTCAAGGAAGGACGAGGAATTACATCACCTACGCCACCACTCTCCTTCAGgttaccgtgc ... tgctctacagGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAAT
EST: CTCAAGGAAGGACGAGGAATTACATCACCTACGCCACCACTCTCCTTCAG GAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATEST: gi|7684754|gb|AW755402.1|AW755402
genomic: CTCAAGGAAGGACGAGGAATTACATCACCTACGCCACCACTCTCCTTCAGgttaccgtgc ... tgctctacagGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAAT
EST: CTCAAGGAAGGACGAGGAATTACATCACCTACGCCACCACTCTCCTTCAG GAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAAT
genomic: CTCAAGGAAGGACGAGGAATTACATCACCTACGCCACCACTCTCCTTCAGgttaccgtgc ... tgctctacagGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAAT
ttatctagaatcaactgatattttactatttttaacattttatcttgctctacagGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAG
ttttaac putative branch site (score: 2)
ttttatcttgctct CT-rich tract
aatcaactgatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctcccttttgtttttagtatgatccatccattcaagtatcaatttatctagaatcaactgatattttactatttttaacattttatcttgctctacagGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAG
ttctccc
- - - - - - - - - - - - tccatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - caactga