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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTCTCTCTCCCACCCATATCCCCAAAACCTGCCTCTGTCATCTGTGAGAGTGGCTCATACCATATCATATCACATCTTATCCAGACAAAACAACTGTTgtatgtgagatgagattattctctaaaccctagcatactcggatttcatttttctctgtttctgaaatttgtgttttattttag

Basic information

species Glycine max
transcript GLYMA04G39480.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7588095|gb|AW703898.1|AW703898
EST:     AGTGGCTCATACCATATCATATCACATCTTATCCAGACAAAACAACTGTT                         ATGGATAGGTATCAGAGGGTAGAGAAGCCCAAGGCAGAGAGCCCTATAAAC
genomic: AGTGGCTCATACCATATCATATCACATCTTATCCAGACAAAACAACTGTTgtatgtgaga ... tttattttagATGGATAGGTATCAGAGGGTAGAGAAGCCCAAGGCAGAGAGCCCTATAAAC
EST: gi|19936967|gb|BQ081088.1|BQ081088
EST:     AGTGGCTCATACCATATCATATCACATCTTATCCAGACAAAACAACTGTT                         ATGGATAGGTATCAGAGGGTAGAGAAGCCCAAGGCAGAGAGCCCTATAAAC
genomic: AGTGGCTCATACCATATCATATCACATCTTATCCAGACAAAACAACTGTTgtatgtgaga ... tttattttagATGGATAGGTATCAGAGGGTAGAGAAGCCCAAGGCAGAGAGCCCTATAAAC
EST: gi|10235369|gb|BE804257.1|BE804257
EST:     AGTGGCTCATACCATATCATATCACATCTTATCCAGACAAAACAACTGTT                         ATGGATAGGTATCAGAGGGTAGAGAAGCCCAAGGCAGAGAGCCCTATAAAC
genomic: AGTGGCTCATACCATATCATATCACATCTTATCCAGACAAAACAACTGTTgtatgtgaga ... tttattttagATGGATAGGTATCAGAGGGTAGAGAAGCCCAAGGCAGAGAGCCCTATAAAC
EST: gi|254331474|gb|GR843431.1|GR843431
EST:     AGTGGCTCATACCATATCATATCACATCTTATCCAGACAAAACAACTGTT                         ATGGATAGGTATCAGAGGGTAGAGAAGCCCAAGGCAGAGAGCCCTATAAAC
genomic: AGTGGCTCATACCATATCATATCACATCTTATCCAGACAAAACAACTGTTgtatgtgaga ... tttattttagATGGATAGGTATCAGAGGGTAGAGAAGCCCAAGGCAGAGAGCCCTATAAAC
EST: gi|8827115|gb|BE210845.1|BE210845
EST:     AGTGGCTCATACCATATCATATCACATCTTATCCAGACAAAACAACTGTT                         ATGGATAGGTATCAGAGGGTAGAGAAGCCCAAGGCAGAGAGCCCTATAAAC
genomic: AGTGGCTCATACCATATCATATCACATCTTATCCAGACAAAACAACTGTTgtatgtgaga ... tttattttagATGGATAGGTATCAGAGGGTAGAGAAGCCCAAGGCAGAGAGCCCTATAAAC
EST: gi|15336844|gb|BI497500.1|BI497500
EST:     AGTGGCTCATACCATATCATATCACATCTTATCCAGACAAAACAACTGTT                         ATGGATAGGTATCAGAGGGTAGAGAAGCCCAAGGCAGAGAGCCCTATAAAC
genomic: AGTGGCTCATACCATATCATATCACATCTTATCCAGACAAAACAACTGTTgtatgtgaga ... tttattttagATGGATAGGTATCAGAGGGTAGAGAAGCCCAAGGCAGAGAGCCCTATAAAC
EST: gi|7684754|gb|AW755402.1|AW755402
EST:     AGTGGCTCATACCATATCATATCACATCTTATCCAGACAAAACAACTGTT                         ATGGATAGGTATCAGAGGGTAGAGAAGCCCAAGGCAGAGAGCCCTATAAAA
genomic: AGTGGCTCATACCATATCATATCACATCTTATCCAGACAAAACAACTGTTgtatgtgaga ... tttattttagATGGATAGGTATCAGAGGGTAGAGAAGCCCAAGGCAGAGAGCCCTATAAA-