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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAGgtgggaggatcaatatctttatggaatatgttggcctgcatttgttcatcttatgttcatgtgttgtgatggttctgttccttgtttcag

Basic information

species Glycine max
transcript GLYMA04G39480.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7588095|gb|AW703898.1|AW703898
EST:     CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAG                         AGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATA
genomic: CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAGgtgggaggat ... cttgtttcagAGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATA
EST: gi|16280150|gb|BI943809.1|BI943809
EST:     CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAG                         AGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATA
genomic: CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAGgtgggaggat ... cttgtttcagAGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATA
EST: gi|19936967|gb|BQ081088.1|BQ081088
EST:     CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAG                         AGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATA
genomic: CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAGgtgggaggat ... cttgtttcagAGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATA
EST: gi|10235369|gb|BE804257.1|BE804257
EST:     CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAG                         AGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATA
genomic: CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAGgtgggaggat ... cttgtttcagAGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATA
EST: gi|254331474|gb|GR843431.1|GR843431
EST:     CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAG                         AGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATA
genomic: CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAGgtgggaggat ... cttgtttcagAGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATA
EST: gi|17962956|gb|BM269711.1|BM269711
EST:     CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAG                         AGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATA
genomic: CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAGgtgggaggat ... cttgtttcagAGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATA
EST: gi|7684754|gb|AW755402.1|AW755402
EST:     CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAG                         AGAAGGATTGTTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATAT
genomic: CAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAGgtgggaggat ... cttgtttcagAGAAGGATTGTT-GGTCTGCATCAAAACACCCAAATTGGATCAACTGATAT