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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttttgtttattgcaaattatctcttccacacgtgtaccaattagattgaactaaacatgttttggttttgcag

Basic information

species Glycine max
transcript GLYMA04G39380.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os10g36650.1 (Oryza sativa), 5'ss of exon 4
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttttgtttattgcaaattatctcttccacacgtgtaccaattagattgaa------ctaaacatgttttggttttgcag-----------
 || |||||||||||||| |||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||||||||| || ||||||||||||||||| || |     |        | |||  ||||  | ||   | | |  | | | ||       ||  |||| | ||  |||                
GCCAAGCAGCATGAAGATCAAGGTTGTCGCTCCGCCAGAGAGGAAGTACAGTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGgtaat-gcaaaatcatccaacagttaattcttg-atacactttctagattgttcgagaaggttcttgacatatgtttctttccttttttttgtgcag

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os03g61970.1 (Oryza sativa), 5'ss of exon 4
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattg------ttttgtttattgcaaattatctcttccacacgtgtaccaattag----attgaactaaacatgttttggttttgcag----------
 || |||||||||||||| ||||| ||||| || || |||||||| || ||||| ||||||||||| || |||||||| ||||||||||| ||||| |||||  |||      || | |||| | |      |   |  ||     ||||  ||  |    ||| |  |||   ||    |   | |||           
ACCAAGCAGCATGAAGATCAAGGTCGTGGCACCTCCTGAGAGAAAATACAGTGTCTGGATTGGAGGTTCTATCCTTGCCTCCCTCAGCACATTCCAACAGgtacttgcatgcattctctttaattctgggggttcatggcatgttggtacttatctgcagcattcatttaattctggggagtcctggcatttgggcacct

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g73310.1 (Oryza sativa), 5'ss of exon 4
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttttgtttattgcaaattatctcttccacacgtgtaccaatt-agattgaactaaacatgttttggttttgcag------------------------------------------------------------------------------
||| |||||||||||||| |||||||| |||||||| ||  | ||||| ||||| ||||| ||||| || ||||| || || |||||||||||||||||||| |  ||  |  | ||| ||  || |    | | |||  | |  | || | |   |  | |  |    |   |||||                                                                                 
TCCAAGCAGCATGAAGATCAAGGTTGTCGCTCCACCTGAACGCAAGTACAGTGTCTGGATAGGAGGGTCTATCCTGGCTTCTCTCAGCACCTTCCAGCAGgtaa--gtccttatcattacagcttcttagatgctcaccagaattagttcataactacttcataaccaatccattttgtttatttgtccacaccaagttgtattttaatggttttgctaatgcacatgtgatttgtttgcttggcattgataaaaacag

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os11g06390.6 (Oryza sativa), 5'ss of exon 4
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttttgttta----ttgcaaattatctcttccacacgtgtaccaattagattgaactaaacatgttttggttttgcag------
 || |||||||||||||| ||||| ||||| || || ||||| || || ||||| ||||| ||||| || |||||||| ||||| ||||||||||| ||||| |   ||  |  ||    ||   |  || |       || || |  |   |   |   |  |    | ||||||  |    |      
ACCAAGCAGCATGAAGATCAAGGTGGTGGCACCGCCTGAGAGGAAATACAGTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTTAGCACCTTCCAACAGgtaaaccttacgcctacactttatgaggtagcaagaatgcaggtatttctgctttctgttaacatcattcttttggcatctatgctacag

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 5'ss of exon 4
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgt--gattgttttgtttattgcaaattatctcttccacacgtgtaccaattagattgaactaaacatgttttggttttgcag------------------------------------------
 || |||||||||||||||||||| || |||||||| ||| | ||||| || || ||||| ||||| || ||||| || || |||||||| ||||| |||||  ||   |  |||| ||    | ||    |    |    |  ||         || |  | |  | |  || ||   | |                                          
CCCGAGCAGCATGAAGATTAAGGTCGTTGCTCCACCTGAGCGCAAGTACAGCGTCTGGATCGGAGGGTCGATCCTAGCCTCACTCAGCACTTTCCAACAGgtaggaagctcctgttcatctgtagttgctacaataattgttaaactttactttctggaacatatgtctcatgattaacctgtggtaacatctaaaatctgttgtatgtcgtgttggtttgcag

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G082484_T01 (Zea mays), 5'ss of exon 4
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttttgtttattgcaaattatctct-tccac-acgtgtaccaattagattgaact---aaacatgttttggttttgcag------
 || |||||||||||||| ||||| || |||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||||| || |||||||| |        |||   ||   |  ||| | || || |  ||   | |||   |  |  |   | | | ||| | ||||| |        
GCCAAGCAGCATGAAGATCAAGGTCGTCGCTCCACCAGAGAGGAAGTACAGTGTCTGGATCGGAGGATCAATCCTTGCATCCCTGAGCACATTTCAGCAGgtaacaccaagttttccggcggctattctgtatctactatctgagtctattttgtgaagttctgacataagttcttgttttccctgtgcag

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G030169_T02 (Zea mays), 5'ss of exon 4
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttttgtttattgcaaattatctct-tccaca-cgtgtaccaattagattgaactaaacatgttttggttttgcag---------------------------------------------------------
 || |||||||||||||| ||||| || ||||| || ||||| ||||| ||||| |||||||||||||||||||| |||||||| ||||| ||||||||||| |         ||    |   |  ||| | ||||||   | |    ||| |    ||   | |      | |  |||| |                                                         
GCCAAGCAGCATGAAGATCAAGGTCGTCGCTCCGCCGGAGAGGAAGTACAGTGTCTGGATTGGAGGATCAATCCTCGCATCCCTGAGCACATTCCAGCAGgtaacaccaagtcttccgacggctgttctgtatccacaatctatgtttatttgtgaaaatgcacctcacggtagggttgcggagaaaaggtttatttgtgaagctactctgacattaagtccatcttttccctgtgcag

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G126190_T02 (Zea mays), 5'ss of exon 4
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttttgt-----ttattgcaaatta-tctcttccacacgtgtaccaa---ttagattgaactaaacatgttttggttttgcag---------------------------
 || ||||||||||| || ||||| ||||||||||| ||||| || || ||||| ||||| ||||| || |||||||| ||||| ||||||||||| ||||| |     || |     || ||       | |  ||    ||  | | ||||   || | | |  | |   |  | |||||| |  |                            
CCCGAGCAGCATGAAAATCAAGGTGGTGGCTCCACCCGAGAGGAAATACAGTGTCTGGATAGGAGGGTCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaaccttataacacttgttattttccagttgctatggcaaatattccaacctttcggtagttccagtaagctcttggttctaaaaacatgctctcgtatttatatgctacag

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G053299_T01 (Zea mays), 5'ss of exon 4
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttttgtttattgcaaattatctcttccacacgtgtaccaattagattga-actaaacatgtttt--ggttttgcag-----------------
 || |||||||||||||| ||||| ||||| || || |||||||| || |||||||||||||| || || |||||||| || ||||| || |||||||||||  || ||    | |    |   | |  ||   |||| | |     |   || || | || |    || |  |||     |                  
GCCGAGCAGCATGAAGATCAAGGTCGTGGCGCCTCCTGAGAGAAAATACAGTGTTTGGATTGGTGGCTCGATCCTTGCGTCGCTCAGTACGTTCCAGCAGgtacttattaacatgaccctatcgtcttgctgtaacacttatggtcttaccatggagattatatgctttcttgggtgccttattgcttttatcatgtctt

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G006765_T02 (Zea mays), 5'ss of exon 4
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtga--------------ttgttttgttt---------attgcaaat-tatctcttccacacgtgtaccaattagattgaactaaa--catgttttggttttgcag------
 || ||||||||||| || ||||| ||||| || || ||||| || || ||||| ||||| |||||||| |||||||| ||||| ||||||||||| ||||| |              || |||| |||         || |||||| |  |       ||   || ||| |    |   ||||||  |||| | |||| ||   |      
GCCGAGCAGCATGAAAATCAAGGTGGTGGCACCGCCTGAGAGGAAATACAGTGTCTGGATAGGAGGATCCATCCTTGCCTCCCTGAGCACCTTCCAACAGgttaaaaacttacacctttttttttatttgcagctgcaatggcaaatattgcaacctttcagtagttccagtatcttcttactaaaaacatgctctggtatttatgctacag

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G437445_T01 (Zea mays), 5'ss of exon 5
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttttgtttattgcaaa-----------ttatctcttccacacg-tgtaccaattaga--ttgaactaaacatgttttggttttgcag
 || |||||||||||| | ||||| || ||||  |||||||| ||||| |||||||||||||| || || || || || |||||||| ||||||||||||||  ||    | |  |   | ||           ||   |  ||  || | | |   | ||  |  ||||  ||  | |||| | || ||| ||
CCCCAGCAGCATGAAGGTGAAGGTGGTTGCTCTGCCAGAGAGGAAGTACAGTGTTTGGATTGGTGGTTCCATTCTGGCCTCCCTCAGTACCTTCCAGCAGgttgttaccctctcaaaatctaaatgagacgtttttgcttgctctgcaagctattgtatttgaaatttgacttagtcttgttattgtgttgtag

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G407517_T01 (Zea mays), 5'ss of exon 11
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttttgtttat-tgcaaattat-ctcttccacacgtgtaccaattagattgaact--aaacatgttttggttttgcag-----------
 ||||||||||||||| | ||||| || ||||| || ||||| ||||| |||||||||||||| || || || || || |||||||| ||||| ||||||||  ||    | |  |  |  |||| |  |  |||  |  |     ||||   |||| | |  |||  ||  || || |||              
CCCTAGCAGCATGAAGGTGAAGGTGGTTGCTCCGCCGGAGAGGAAGTACAGTGTTTGGATTGGTGGTTCCATTCTGGCCTCCCTCAGTACCTTTCAGCAGgttgttaccctctcaaaatctaaatgagacgtttctgcttgctctgcaatct-attgtatttgaaatttgacttagtcttgttattgtgttgtag

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: AC194350.3_FGT001 (Zea mays), 5'ss of exon 7
------------------------------------------------------------------------------------TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttttgtttattgcaaattatctcttccacacgtgtacca-attagattgaact--aaacatgttttggttttgcag-----------
                                                                                     || || ||||||||| | ||||| || ||||| || ||||||||||| |||||||||||||| || ||||| || || |||||||| ||||| ||| ||||  || |  |||  |   | || |    | |     | ||  |   | |  |||| | |  |||  ||  || || |||              
GTACGGTAATGTTGTCCTCAGTGGTGGCTCCACTATGTTCCCTGGTATTAGTGACCGCATGAGCAAGGAGATTACTGCACTTGCCCCCAGTAGCATGAAGgtgaaggtggttgctccgccggagagaaagtacagtgtttggattggtggttcaattctggcctccctcagtacctttcagtaggttgttatcctgtcaaaatctaaatgagacgtttttgcttgctctgcaatctattgtatttgaaatttgacttagtcttgttattgtgttgtag

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G439369_T01 (Zea mays), 5'ss of exon 3
------------------------------------------------------------------------------------TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGT-TTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttttgtttat-tgcaaattat-ctcttccacacgtgtaccaattagattgaact--aaacatgttttggttttgcag-----------
                                                                                     ||||||||||||||| | ||||| || ||||| |||||||| ||||| ||||| ||||||||| || || || || || |||||||| ||||| ||||||||  ||    | |  |  |  |||| |  |  |||  |  |     ||||   |||| | |  |||  ||  || || ||               
GTACGGTAATGTTGTCCTCAGTGGTGGTTCCAATATGTTCTCTGGTATTGGTGACCGCATGAGCAAGGAGATTACTGCACTTGCCCCTAGCAGCATGAAGgtgaaggtggttgctccgccagagaggaagtacagtgtgttggattggtggttccattctggcctccctcagtacctttcagcaggttgttaccctctcaaaatctaaatgagacgtttctgcttgctctgcaatct-attgtatttgaaatttgacttagtctttttattgtgttgtag

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G110378_T04 (Zea mays), 5'ss of exon 5
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgt---gattgttttgtttattgcaaattatctc-------ttccacacgtgtaccaattagattgaactaaa--catgttttggttttgcag----------------------
 || |||||||||||||| ||||| || || ||||| ||||| ||||| ||||| ||||| ||||| || ||||| || || |||||||| ||||| |||||   | ||||||   ||  |   |  |    |       |||        | |||||  |  ||||  |||  || || |   || ||                         
ACCAAGCAGCATGAAGATCAAGGTCGTCGCGCCACCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgggttgtttatattgctttcagctgctgcacttgatttctttttaactcccaatatggctgaaacaaagtcacgtctgaattctgttatgcgatgccattgatttaccag

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G104017_T04 (Zea mays), 5'ss of exon 4
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgt----gattgttt-tgtttattgcaaattatctc-ttccacacgtgt------accaattagattgaactaa--acatgttttggttttgcag----------------------
 || |||||||||||||| ||||| || || ||||| ||||| ||||| ||||| ||||| ||||| || ||||| || || |||||||| ||||| |||||    | |||||| | | || |   |  |    |  | ||   || |      |  ||   | ||||| | |  |||  |     || ||  |                      
ACCAAGCAGCATGAAGATCAAGGTCGTCGCACCACCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgcggttgtttatatctactttcagctgctgcacttcatttgttttaactcagtaacatggttgaaatgataacacttccgaattctgttgtgatgtggcattgatgtaccag

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G067985_T10 (Zea mays), 5'ss of exon 4
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgtttt----gtttattgcaaat-tatctcttccacacgtgta--ccaattag-attgaactaaa--catgttttggttttgcag----------------------
 || |||||||||||||| ||||| || || || || ||||| ||||| ||||| ||||| ||||| || ||||| || || |||||||| ||||| |||||   | ||||     ||| || ||  |  | | ||||    | | ||   | ||||     ||| | ||  ||  | |   || ||                         
ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTACAGTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAGgtatgtattttctatatttgtttcagctgcagcacttcatttcttttaactctattatcgccgaaatgaaatcacttctgaattctgttattatgtgccactgatttaccag

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G321750_T01 (Zea mays), 5'ss of exon 2
------------------------------------------------------------------------------------TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGT-TTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttttgtttat-tgcaaattat-ctcttccacacgtgtaccaattagattgaact--aaacatgttttggttttgcag-----------
                                                                                     ||||||||||||||| | ||||| || ||||| || ||||| ||||| ||||| ||||||||| || || || || || |||||||| ||||| ||||||||  ||    | |  |  |  |||| |  |  |||  |  |     ||||   |||| | |  |||  ||  || || ||               
GTACGGTAATGTTGTCCTCAGTGGTGGTTCCACTATGTTCTCAGGTATTGGTGACCGCATGAGCAAGGAGATTACTGCACTTGCCCCTAGCAGCATGAAGgtgaaggtggttgctccgccggagaggaagtacagtgtgttggattggtggttccattctggcctccctcagtacctttcagcaggttgttaccctctcaaaatctaaatgagacgtttctgcttgctctgcaatct-attgtatttgaaatttgacttagtctttttattgtgttgtag

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G067985_T02 (Zea mays), 5'ss of exon 4
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtg-attgttttgtttattgcaaatt----------atctcttccacacgtgtaccaatta-gattgaactaaacatgttttg-gttttgcag----------------------
 || |||||||||||||| ||||| || || || || ||||| ||||||||||| ||||| ||||| || ||||| || || || ||||| ||||| |||||   |||| ||||||||   |  ||          || |  |      |    |  |||| |||  ||| ||| |  || || ||| ||                         
ACCAAGCAGCATGAAGATCAAGGTCGTTGCACCGCCTGAGAGGAAGTATAGTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgtattgtttatattactttcagctgctgcattttatttctctgaactcgtattatgatgaaacgaaataacttctgagttctgttatgacgtgcccttgatttaccag

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G053284_T01 (Zea mays), 5'ss of exon 4
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttttgtt--tattgcaaattatctcttccacacgtgtaccaatt----agattgaac-taaacatgttttggttttgcag---------------------
 || |||||||||||| | ||||| || ||||| || ||||| ||||| || ||||||||||| || || || || || || ||||| ||||||||||||||  ||  ||||||  | |  |||| | |   ||| ||   | | |    |    || |  |   || |     |||| |||   |                      
CCCCAGCAGCATGAAGGTGAAGGTGGTTGCTCCGCCGGAGAGGAAGTACAGCGTTTGGATTGGTGGCTCCATTCTGGCCTCTCTCAGTACCTTCCAGCAGgttgttagtttgttactgtctcaaaatctaaattcaacgtttctgcttgctttgcagttctagtgtatatgaagtttgatttattaatcttgttattgtgttgtgtag

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G449479_T01 (Zea mays), 5'ss of exon 1
------------------------------------------------------------------------------------TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGT-TTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTC-CAGCAGgtgattgttttgtttat-tgcaaattat-ctcttccacacgtgtaccaattagattgaact--aaacatgttttggttttgcag-----------
                                                                                     ||||||||||||||| | ||||| || ||||| || ||||| ||||| ||||| ||||||||| || || || || || |||||||| |||||  ||||||||  ||    | |  |  |  |||| |  |  |||  |  |     ||||   |||| | |  |||  ||  || || ||               
GTACGGTAATGTTGTCCTCAGTGGTGGTTCCACTATGTTCTCTGGTATTGGTGACCGCATGAGCAAGGAGATTACTGCACTTGCCCCTAGCAGCATGAAGgtgaaggtggttgctccgccggagaggaagtacagtgtgttggattggtggttccattctggcctccctcagtaccttttcagcaggttgttaccctctcaaaatctaaatgagacgtttctgcttgctctgcaatct-attgtatttgaaatttgacttagtctttttattgtgttgtag

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G49240.1 (Arabidopsis thaliana), 5'ss of exon 4
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtga--ttgttttgtttattgcaaattatctcttccacacgtgtaccaattagattgaactaaac--atgttttggttttgcag-----------------------
 || |||||||||||||||||||| ||||| ||||| ||||| ||||| ||||| |||||||| || || |||||||| ||||||||||| ||||||||||| |  |||   |||   ||  || || |  ||||     ||  |  || |  |   ||||   |  ||| |||   ||| | |                       
CCCGAGCAGCATGAAGATTAAGGTCGTGGCACCACCCGAGAGGAAGTACAGTGTCTGGATTGGTGGTTCTATCCTTGCTTCCCTCAGCACTTTCCAGCAGgtaaaattggactgtcatttctaagtttttgcttcttgtggttgattaaatgtagacaactcctctaatggtttacattttctgtgtgtgtgtgtgtgtgtaatcag

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 4
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtga------ttgttttgtttattgcaaattatctcttccacacgtgtacca---attagattgaactaaacatgttttggttttgcag---------
 ||||||||||||||||| ||||| || || || ||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |         ||  |  | ||  ||| | ||   ||||    || | ||    | | | |     ||   ||||||| || ||            
ACCTAGCAGCATGAAGATCAAGGTGGTTGCACCGCCAGAGAGAAAATACAGTGTCTGGATCGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAACAGgtaaaaatcccaattccgcctctttaaaactttcagctccatttatgaaacatgagtgaaaatactgaaattttgttttgtttgtgtgtgtgaatcag

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G18780.2 (Arabidopsis thaliana), 5'ss of exon 3
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtga---ttgttttg--tttattgcaaattatctcttccacacgtgtaccaattagat-tgaactaaacatgttttggtt--ttgcag
 || |||||||||||||||||||| || || ||||| || || ||||| ||||| ||||| || || || || ||||| ||||||||||| ||||||||||| |   ||| |  |  ||| || | |||  |||||| ||  |   |   ||| | |     | ||   |||| |  |||  || |||
ACCAAGCAGCATGAAGATTAAGGTCGTTGCACCACCTGAAAGGAAGTACAGTGTCTGGATCGGTGGTTCCATTCTTGCTTCCCTCAGCACATTCCAGCAGgtaaaaattgatcagattttgtttcgaat--tctcttacatgcaaattgaaatcaaaggctgattatttatgtatatgttggttacag

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 5'ss of exon 5
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttttgtttattgcaaattatctcttccacacgtgtaccaattagattgaacta----aacatg--ttttggttttgcag
||| |||||||||||||| ||||| ||||| ||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||  ||  ||| |||    |  | | | | |   || |     ||  |||| |  |    ||||||  ||||| |  | |||
TCCCAGCAGCATGAAGATCAAGGTGGTGGCACCACCTGAGAGAAAGTACAGTGTCTGGATTGGAGGATCAATTCTTGCATCCCTCAGCACCTTCCAGCAGgtgatt--ttcattttttgtttttggtttttacaaatggtttgattcttttattgcatgatactaacatgctttttgttggtacag

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 4
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttttgtttattgcaaattatctcttccacacgtgtaccaattagattgaactaaacatgttttggttttgcag------------------------
 ||    ||||||||||| ||||| ||||| || |||||||| ||||| ||||| ||||| ||||| || ||  | ||||| ||||| |||||||| |||||  || ||||   |||| ||  |  |   || ||  | |   |  |||    |          ||  ||   | ||||                         
ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtatttctttta--tattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttatctgcattttgacgtgttggggtttttgcag

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S337_21V6.2 (Physcomitrella patens), 5'ss of exon 5
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgat-tgttttgtttat-tgcaaatt--atctc----ttccacacgtgtaccaattagattgaa-ctaaacatgttttggttttgcag-----------------------------------------------
 ||    ||||||||||| ||||| ||||| || |||||||| ||||| ||||| ||||| ||||| || ||  | ||||| ||||| |||||||| ||||| || | |||   |  | |   | ||  || ||    ||       |||    ||    |||   ||  | ||| |   ||||  |                                                 
ACCATCGAGCATGAAGATAAAGGTGGTGGCGCCGCCAGAGAGGAAGTACAGTGTATGGATAGGAGGGTCTATTTTGGCATCTCTCAGTACCTTCCAACAGgtaatgtatttgactcgtgtctgagttgcatttcgtgtttttttttatgtcttcatgtctttgtttcttcaaatgctcgcgtttgtcgaggctgtaatctttctggaatttaatccgtttacttgttgtggtgcag

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S372_48V6.1 (Physcomitrella patens), 5'ss of exon 3
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttttgtttattgcaaattatctcttccacacgtgtaccaattagattgaactaaacatgttttggttttgcag-----------------------------------------------------------------------
 ||    ||||||||||| ||||| ||||| || || ||||| ||||| || || ||||| ||||| || ||| | |||||||||||||||||||||||||| |    |  ||||       || || | ||| ||   || ||    || ||   | | ||| | ||||   || ||||                                                                       
GCCGTCAAGCATGAAGATCAAGGTGGTGGCGCCTCCGGAGAGGAAGTACAGCGTGTGGATCGGAGGCTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGgtaa--actgagtttgc-----atgatattttctacgt-tggacgtggtaaat---attgaacttcttttcagttagcagtcggaatttgagtatgtttcgagaggttggttaattcggtgtttgcacatattgttctttctgtggtgcag

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ17401 (Selaginella moellendorffii), 5'ss of exon 3
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttttgtttattgcaaattatctcttccacacgtgtaccaattagattgaactaaacatgttttggttttgcag
||| |||||||||||||| ||||| || ||||| || ||||| ||||| || || ||||||||||| || ||||| || || |||||||||||||| |||||          | | ||||   || |   |  ||  | |||     ||   | |       ||                
TCCCAGCAGCATGAAGATCAAGGTGGTTGCTCCTCCGGAGAGGAAGTACAGCGTCTGGATTGGAGGTTCTATCCTGGCTTCGCTCAGCACCTTCCAACAGgtaccacaacattcttttgctcgtttttcttatcagccttgtttttctttt-tcgtttctcgcag---------------

upper sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ35077 (Selaginella moellendorffii), 5'ss of exon 3
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttttgtttattgcaaattatctcttccacacgtgtaccaattagattgaactaaacatgttttggttttgcag
||| |||||||||||||| ||||| || ||||| || ||||| ||||| || || ||||| ||||| || ||||| || || |||||||||||||| |||||             |   |||  |   ||||   | ||| |  |   |         |   | | || |  ||| ||||
TCCCAGCAGCATGAAGATCAAGGTGGTTGCTCCTCCGGAGAGGAAGTACAGCGTCTGGATCGGAGGTTCTATCCTGGCTTCGCTCAGCACCTTCCAACAGgt-------------accacaacat---tcttttgctcgtttttcttatcagccttgtttttctttttcttttttcgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13252304|gb|BG363207.1|BG363207
EST:     GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
genomic: GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttt ... ggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
EST: gi|26059734|gb|CA802648.1|CA802648
EST:     GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
genomic: GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttt ... ggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
EST: gi|208062241|gb|GD858919.1|GD858919
EST:     GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
genomic: GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttt ... ggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
EST: gi|21602335|gb|BQ612666.1|BQ612666
EST:     GGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
genomic: GGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttt ... ggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
EST: gi|208055901|gb|GD851998.1|GD851998
EST:     GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
genomic: GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttt ... ggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
EST: gi|193675632|gb|FK615698.1|FK615698
EST:     GNGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
genomic: GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttt ... ggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
EST: gi|19937773|gb|BQ081416.1|BQ081416
EST:     GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
genomic: GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttt ... ggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
EST: gi|214009896|gb|DB988012.1|DB988012
EST:     GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCGAC
genomic: GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttt ... ggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
EST: gi|209715057|gb|BW677100.1|BW677100
EST:     GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
genomic: GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttt ... ggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
EST: gi|208239711|gb|GE036739.1|GE036739
EST:     GGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATATCGAGGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
genomic: GGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttt ... ggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttttgtttattgcaaattatctcttccacacgtgtaccaattagattgaactaaacatgttttggttttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT