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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtatttgtatccatctgtttcaattcatagttttgtcatcacattgttctttccctgaatcaaatactttctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG

Basic information

species Glycine max
transcript GLYMA04G39380.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os01g73310.1 (Oryza sativa), 3'ss of exon 3
---------gt-ttgtatttgtatccatctgtttcaattcatagttttgtcatcac-----attgttctttccctgaatcaaatactttctgaa---acagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG
         || ||  | || |||  |||| |    | | |||||  ||  || |       ||| ||  | | |    | ||| || | | ||   |||||||||||| ||||||| || |||||||| || || ||||| || |||||||| || |||||||| |||||||| || |||||| ||||||||||||||||
ggtcagtaggtgttagaattatatt-atctatgctcaataatagtcgtgcaattatttaatgttggtcagtgcatatggctaatgctgttttaatcaacagGTATTGTTCTGGACTCGGGTGATGGTGTGAGCCATACTGTTCCCATCTATGAAGGATATGCACTTCCTCATGCAATCCTTCGTCTGGATCTTGCTGGCCG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os03g61970.1 (Oryza sativa), 3'ss of exon 3
gtttgtatttgtatccatctgtttcaattcatagttt------tgtcatcacattgttctttccctgaatcaaatactttctgaa----acagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG
|  ||| |   | | |  || ||  || | |   |||      |  |||| | |  ||  |    |||  | | | | || ||       ||||||||||  | || ||||| |||||||| | |||||| |||||||||||||| || |||||||| |||||||| |||||||| |||||||||||||| ||
gcatgtgtccattttctactattcaaaatgagtctttgtacacttacatctcttcattggtgatatgaccccagtgcgttgtggcttgtgcagGTATTGTGCTTGATTCTGGTGATGGTGTGACTCACACAGTGCCAATCTATGAAGGATATGCACTTCCTCATGCTATTCTTCGGTTGGATCTTGCTGGTCG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os11g06390.6 (Oryza sativa), 3'ss of exon 3
gtttgtatttgtatccatctgtttcaattcatagttttgtcatcacattgttctttccctgaatcaaatactttctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG
        |  || |   ||       || | ||||||   |     |   | | | | ||||     |   |  |||  ||||||| || ||||||||||| |||||||| || ||||| |||||||||||||| || ||||| || ||||||||||| || ||| |||| |||||||| ||
-------gtaataactcactcacatggttgagagttttaaaaaatattcactttattcatgaactg--ttgctcttgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATGAAGGATATGCCCTTCCTCATGCCATCCTGCGTCTGGACCTTGCTGGGCG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 3
-----------gtttgtatttgtatccatctgtttcaattcatagtt--ttgtcatcacattgttctttccct----gaatcaaatactt-tctgaa--acagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG
           |     ||| || ||||   |  | ||   | || |   ||||  ||  |   | |||   |    | | |  ||  || ||||     ||||||||||| | || ||||| |||||||| || ||||| ||||| || ||||| || ||||| || |||||||||||||| ||||||||||| ||||| ||
aagctacctgcgaccccatt-gtgtccag--gcctgaacaaacagctaactgtcgacaagtaaatgttttatttagaggagcttatgtttctctgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATGAAGGATATGCGCTTCCTCATGCCATTCTCCGTTTGGATCTGGCTGGTCG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os10g36650.1 (Oryza sativa), 3'ss of exon 3
-----------gtt--tgtatttgtatccatctgtttcaattcatagtt-ttgtcatcacattgt-tctttccctgaatca-aatactttctga-aacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG
           |||  ||  ||  | | ||  |||| |||| || |     |||||| |  || | || |    ||  ||   ||| ||| ||  || ||||||||| ||||| ||||| |||||||| |||||||| || |||||||| || || ||||| || || ||||||||||| ||| | |||||||||||  |
ataaaatttaagttactgccttgttttacagatgttacaatacacaaaaactgtcattatgttctctcgtaatttgtttcttgatattttttgtcaatagGTATTGTCTTGGATTCTGGAGATGGTGTCAGTCACACAGTCCCAATCTACGAAGGTTATGCCCTTCCGCATGCCATTCTCCGTCTTGATCTTGCTGGTAG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 3
gtttgtatttgtatccatctgtttcaattcatagttttgtcatcacattgttctttccctgaatca-aatactttctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG
    ||||   |||  | || || ||||  || || ||   ||  || |||  |       | | | | | ||||      ||||||| ||  | |||||||| |||||||| || |||||||| ||||| ||||| || ||| | || |||||||| || || || |||||||||||||||||
----gtatgattatt-acct-ttgcaatagatcgtgttaaaatt-caatgtgttggggggcagtgacacttcttttatctgcagGTATCGTGCTTGACTCTGGTGATGGTGTGAGCCACACTGTTCCAATATATGAAGGATATACGCTTCCTCATGCTATCCTCCGGTTGGATCTTGCTGGCCG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os01g64630.1 (Oryza sativa), 3'ss of exon 3
----------------------------gtttgtatttgtatccatctgtttcaattca--tagttttgtcatcacatt-gttctttccctgaatcaaatactttctgaa-acagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG
                             |||| ||||  |   |  | | | ||   |  |  ||||   |||  ||  ||  |    |||    || || ||| | ||  ||||||||||  | |||||||| |||||||| ||||||||||| ||||| || || || | | ||||||| ||||| ||||||||  | ||||||||||| ||
gtatgatgattgctgtacaaaaaaaaccatttg-attttaacatacttatctaaaaaaaattgattttaatatccaatgagtagtcgaactgcgctaactagtttataaatgcagGTATTGTACTTGACTCTGGTGATGGTGTAAGTCACACTGTTCCAATATACGAAGGATTTACACTCCCGCATGCTATTCTTCGACTCGATCTTGCTGGGCG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 4
----------gtttgtatttgtatccatctgtttcaatt---catagtt-ttgtcatcacattgttctttccctgaatcaaatactttctgaa---acagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG
             |  ||   ||   | |  |   | ||   |||| || ||  |||    | | |  |        |    || ||||| ||   |||||||||||| | |||||||| |||||||| |||||||||||||| || ||||| || ||||| || || ||||||||||||||| ||||||||||||| ||
aaaataagcataatacatcaataataaacaatggaagttaaacataattgtttacatggtgtggctgatgtttccgcttttttattttctcaatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATGAAGGATATGCCCTTCCCCATGCCATTCTTCGTCTGGATCTTGCTGGTCG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G030169_T02 (Zea mays), 3'ss of exon 3
------------gtttgtatttgtatccatctgtttca---attcatagttttgtcatcacattgttctttccctgaatcaaatactttctga--aacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG
            |  ||   || | |  |  || | ||   ||   |  || | ||||    |||  |  | |     |  | |   || ||    |||||||| ||  |||| ||||| |||||||| ||||||||||| ||||||||||| ||||| || ||||| ||||||||||||||| | |||||||||||| |
ctactgcaccagggctgcccttctttataaatgatacagggatatttttttgtttcatttagttggccaatgcacatttggattttgttttggttgacagGTATCGTCCTGGATTCTGGAGATGGTGTCAGTCACACTGTCCCAATCTATGAAGGCTACGCCCTCCCACATGCCATTCTTCGTCTCGATCTTGCTGGCAG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G067985_T03 (Zea mays), 3'ss of exon 2
----------gtttgtatttgtatccatctgtttcaattcatagttttgtcatc-acattgt---tctttccctgaatcaaatactttctgaa---acagGTATTGTT-TTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG
             | |||    |   |    |   || | | |  ||  |  |  |||| ||    ||     |   ||   |  ||||| ||    ||||||||||| || |||||||| |||||||| || ||||||||||| || || || || ||||| || |||||||||||||||||||||||||||||||| | 
aaaatgagtataatatatcaagaataaataatgggaagttaaaacttaattgtttacatggtgtggctggtgtttcctctttttttttctcaatcttcagGTATTGTTCTTTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTC-

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 3
-------------gtttgtatttg--tatccatctgtttcaattcatagttttgtcatcacattgttctttccctgaatcaaatactttctgaa---acagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG
               ||  | ||   | |  |  || |     | | |||||  || |    || || || || |   |    |||||||| ||   |||||||||||  | |||||||| |||||||| || ||||||||||| || || || || ||||| || |||||||||||||||||||||||||||||||| ||
aataaaatatggaagttaaacttaattgtttacatggtgtggctga-agtttcctctttttcttttttttcccttatcttgtttactttctcaatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTCG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G082484_T01 (Zea mays), 3'ss of exon 3
---------------gtttgtatttgtatccatctgtttcaattcatagttttgtcatcacattgttctttccctgaatcaaatactttctga--aacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG
                |  | ||    ||  ||     |   ||| |  || | |||     ||| ||  | |        | |   || ||    |||||||||||  |||| ||||| || ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||||||||||| | |||||||||||  |
tgctgcataaatgatatggggatagaaatggatagaaatattttcctttttatttcactcagttgctcaatgcacattgggattttgttttggttgacagGTATTGTCCTGGATTCTGGAGACGGTGTCAGCCACACTGTCCCAATCTATGAAGGCTATGCCCTCCCGCATGCCATTCTTCGTCTCGATCTTGCTGGTAG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G067985_T05 (Zea mays), 3'ss of exon 4
gtttgtatttgtatccatctgtttcaattcatagttttgtcatcacattgttctttccctgaatcaaatactttctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG-----------
                                                                                              |||||||| |||||||| || ||||||||||| || || || || ||||| || |||||||||||||||||||||||||||||||| ||           
---------------------------------------------------------------------------------------------tGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTCGGGACCTCACAG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G006765_T02 (Zea mays), 3'ss of exon 3
gtttgtatttgtatccatctgtttcaattcatagttttgtcatcacattgttctttccctga-atcaaatactttctgaaa--cagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG
||    | | ||   |||      ||| |   | |        || ||| | |  ||      ||    | || |     |  |||||||||| ||||||||||| |||||||| || ||||| |||||||||||||| || ||||| || ||||||||||| || ||  | || |||||||| ||
gtaatgactcgttcacatggcgaccaaatttcattaggacttacaaattttcccatcttaattatgggttgctgttcatcattcagGTATTGTATTGGACTCTGGTGATGGTGTCAGCCACACAGTGCCAATCTATGAAGGTTATGCCCTTCCTCATGCCATCCTGCGCCTTGACCTTGCTGGGCG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G126190_T02 (Zea mays), 3'ss of exon 3
gtttgtatttgtatccatctgtttcaattcatagttttgtcatcacattgttctttccctgaatca--aatactttctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG
||    |||  |   |||      ||| |   | ||  | | || ||   || |    || ||| |   ||   |  |    |||||||||| ||||||||||| |||||||| || ||||| ||||||||||| || || ||||| || ||||||||||| || ||| | || |||||||| ||
gtaatgattctttaacatggtgaccaaatttca-ttaggacttcccaaatttttccatctcaattatggattgctgttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACGAAGGTTATGCCCTTCCTCATGCCATCCTGCGTCTTGACCTTGCTGGGCG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G053299_T01 (Zea mays), 3'ss of exon 3
-------------------------------gtttgtatttgtatccatctgtttcaattcat-agttttgtcatcacattgttct-ttccctgaatca-aatactttctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG
                                ||| ||     |    |||| |||   ||||  ||  | | |  |||   ||||  | |||   ||    |||| | ||   ||||||||||  | || ||||| |||||||| |  ||||| ||||||||||| ||||| || || |||||||||||||||||| |  ||||||||||||||||
gcacgtgtccactttcacctcttattaaagtttttctaggacaacgtctctgattctcgtcattggtgatctgacgacaccattctactacctatgtctcggtactctgtgtg-cagGTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACGAGGGATACGCGCTCCCTCATGCCATTCTTAGGCTGGATCTTGCTGGCCG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G104017_T01 (Zea mays), 3'ss of exon 3
---------gtttgtat-ttgtatccatctgtttcaattcatagtt--ttgtcatcacattgttctt----tccctgaatcaaatactttctgaa-acagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG
         | | ||||         |  |     || ||| | ||  ||||   |||  |||   |    |  |    |    || | ||     |||||||||||| | || ||||| |||||||| || || |||||||| || ||||| || ||||| || |||||||| ||||| ||| ||||||||||||| ||
agtatctcagctagtataccaagaataaataacggaagtcaaaattagttgtttacacggtgtgactgaagtttcctctttttttattctcaatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATGAAGGATATGCCCTTCCTCATGCTATTCTACGTCTGGATCTTGCTGGTCG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G126010_T01 (Zea mays), 3'ss of exon 3
-----------------------gtttgtatttgtatccat--ctgtttcaattcatagttttgtcatcacattgttctttccctgaatcaaatactttctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG
                        | | || |  ||| ||   |       || ||||  |  | ||   | |    |  || ||   |||||||  |       ||||||||||  |||| || || |||||||| || ||||| || ||||||||||| || ||  |||| |||||||| ||||| |||||||||||||| || ||
gtaagatggctgtcgcctcagatatatatagtgatatgcactacaaagatcatacatacatacggcaatcc-tgacacggtctctttgtcaaatatctctgtgtgcagGTATTGTGATGGATTCCGGTGATGGTGTGAGCCACACGGTTCCAATCTATGAAGGATACACACTTCCTCATGCTATTCTCCGTTTGGATCTTGCGGGGCG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
lower sequence: AT3G18780.1 (Arabidopsis thaliana), 3'ss of exon 2
gtttgta--tttgtatccatctgtttcaattcatagttttgtcatcacattgttctttccctgaatcaaatactttctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG
||| |||  |||    |  | |||||  | |||| |     |||| |  |        | |||| |   ||  |   |  ||||||||||||  |||| ||||| ||||||||   |||||||||||||||||| ||||| |   | || ||||||||||| || ||| | || |||||||| ||
gttagtacattttaggctttttgtttatactcattg----atcattatttgaactgagctctgatt---atcttccattgaacagGTATTGTGCTGGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGTTTCTCTCTTCCTCATGCCATCCTCCGTCTTGACCTTGCTGGACG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
gtttgtatttgtatccatctgtttcaattcatagttttgtcatcacattgttc---tttccctgaa-tcaaatactttctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG
||| ||  ||   || |    |  ||| ||  |||| | | |||   ||  |    ||| | | || ||     |||| || ||||||||||||  | || ||||| ||||||||   |||||||||||||||||| ||||| ||||| || |||||||| || |||||| | |||||||| || ||
gttagttcttaactctaaacatc-caagtctgagttatattatcttcttacttgtatttacttaaagtcgttctctttttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
lower sequence: AT1G49240.1 (Arabidopsis thaliana), 3'ss of exon 3
----gtttgt-atttgtatccatct----------gtttcaattcatagttttg-tcatcacattgttctttccctgaatcaaatactttctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG
    |||  | |||  | || |             ||||   ||  |  ||||  | || |  |  |  |   |       ||  | |||||     ||||||||| ||||||||||| ||||||||   |||||||||||| ||||| ||||| |   |||| || ||||| || || ||| | || |||||||| ||
gttagttcattattaatgtcgagaaaatgaacaaagttttgttttctgtttttaatgattatgtcatattgatcacagtgaaatgattttct---ttagGTATTGTGTTGGACTCTGGTGATGGTGTGTCTCACACTGTGCCTATCTACGAGGGTTTCTCACTTCCACATGCTATCCTCCGTCTCGACCTTGCTGGTCG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 3'ss of exon 4
gtttgtatttgtatccatctg--tttcaattcatagttttgtcatcacattgttctttc--cctgaatcaaa---tactttctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG
||| |||||   |||  | ||  ||  ||||   | |||| |  ||   |||||  |    ||||| |   |   | ||   |  |  |||||||||  |||| ||||| |||||||| ||||||||||||||||| ||||| || |||||||| || ||||| || |||||| | || |||||||| ||
gttcgtattaaaatctttttggattggaattttcatttttcttttc-tgttgttagtgtagcctgagttctaacttgctcctttgactagGTATTGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTGCCAATTTATGAAGGTTATGCACTTCCCCATGCTATCCTTCGTCTTGACCTTGCTGGACG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209715056|gb|BW677099.1|BW677099
EST:     TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTG                         GTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
genomic: TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtattt ... tctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
EST: gi|192297835|gb|FG993159.1|FG993159
EST:     TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTG                         GTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
genomic: TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtattt ... tctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
EST: gi|209716758|gb|BW682240.1|BW682240
EST:     TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTG                         GTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
genomic: TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtattt ... tctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
EST: gi|213613929|gb|DB971046.1|DB971046
EST:     TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTG                         GTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
genomic: TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtattt ... tctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
EST: gi|209728231|gb|BW651666.1|BW651666
EST:     TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTG                         GTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
genomic: TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtattt ... tctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
EST: gi|105635023|gb|DW247741.1|DW247741
EST:     TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTG                         GTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
genomic: TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtattt ... tctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
EST: gi|18710715|gb|BM522518.1|BM522518
EST:     TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTG                         GTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTAT
genomic: TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtattt ... tctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTAT
EST: gi|213588561|gb|DB957625.1|DB957625
EST:     TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTG                         GTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
genomic: TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtattt ... tctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
EST: gi|209712751|gb|BW681605.1|BW681605
EST:     TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTG                         GTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
genomic: TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtattt ... tctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatagttttgtcatcacattgttctttccctgaatcaaatactttctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG
                                        tactttct  CT-rich tract
                                 aatcaaata  TA-rich tract