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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGTTCTCATTTCTCTTTCTGTAGCCCTCAATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAGgtattcatcttaatcgcttgcatcatagctttgatgcaaagtacgtttccttttgctctttgattcagcgctttttttttttttttttgcaatctcgcat...

Basic information

species Glycine max
transcript GLYMA04G39380.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209715056|gb|BW677099.1|BW677099
EST:     ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAG                         TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
genomic: ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAGgtattcatct ... atgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
EST: gi|213617789|gb|DB967600.1|DB967600
EST:     ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAG                         TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
genomic: ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAGgtattcatct ... atgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
EST: gi|192297835|gb|FG993159.1|FG993159
EST:     ATCACCGGAGAGAGAGTGAGTGC-AAGCCATCGTCTTCTTCTCAGACAAG                         TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
genomic: ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAGgtattcatct ... atgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
EST: gi|209716758|gb|BW682240.1|BW682240
EST:     ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGAC-A-                         -AGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
genomic: ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAGgtattcatct ... atgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
EST: gi|209713856|gb|BW684049.1|BW684049
EST:     ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAG                         TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
genomic: ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAGgtattcatct ... atgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
EST: gi|213613929|gb|DB971046.1|DB971046
EST:     ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAG                         TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
genomic: ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAGgtattcatct ... atgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
EST: gi|193493563|gb|FK463547.1|FK463547
EST:     ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAG                         TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
genomic: ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAGgtattcatct ... atgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
EST: gi|209728231|gb|BW651666.1|BW651666
EST:     ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAG                         TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
genomic: ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAGgtattcatct ... atgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
EST: gi|208181831|gb|GD979354.1|GD979354
EST:     ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAG                         TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
genomic: ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAGgtattcatct ... atgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
EST: gi|18710715|gb|BM522518.1|BM522518
EST:     ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAG                         TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
genomic: ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAGgtattcatct ... atgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
EST: gi|213588561|gb|DB957625.1|DB957625
EST:     ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAG                         TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
genomic: ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAGgtattcatct ... atgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
EST: gi|209712751|gb|BW681605.1|BW681605
EST:     ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAG                         TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
genomic: ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAGgtattcatct ... atgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTGTTCTCATTTCTCTTTCTGTAGCCCTCAATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAGgtattcatcttaatcgcttgcatcatagctttgatgcaaagtacgtttccttttgctctttgattcagcgctttttttttttttttttgcaatctcgcat

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