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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactttgcagtttcttctgttatgtgtaattgcatctattagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacag

Basic information

species Glycine max
transcript GLYMA04G39380.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os10g36650.1 (Oryza sativa), 5'ss of exon 2
TAGTTTGGTAAAA--GATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgt--tagtactttgcagttt--cttc----tgttatgtgtaattgc-atctattagtc-tcggtttcgttatcaaacgatttatttctataatgatctgtgtacag---------
   |  | |||||   |||||||| || ||||| ||||| ||||||||||||||||||||||| |||||||| |||||  ||  |  |      ||  | ||    ||||      |||| | | ||  | ||  |   | |    ||  |     | ||  | |  || | |||| | ||          
--ATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaagtgatgacttggcatcgcattgttgaacaaaatttctacctgatggtaattattgttacaattgagaagctcat--caagtattaactgttttcatttttcatag

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g73310.1 (Oryza sativa), 5'ss of exon 2
--TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactttgcagtttcttctgttatgtgtaattgcatctattagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacag
  ||  |   ||  | |||||||| | ||||||||| || || ||||||||||||||||| ||||||||||| ||||| || |  ||    | | ||     || | | ||    || |  | || |   | | || | |     || | |||  |||   | ||       
AGTAAATCTATAGGAAATGGCTGACGGTGAGGATATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtcaggaacttc--atcttttaaaccatctatcatc---tccaagactc-caactgcatttttaccaatttgaattccttaaaattttgcag----

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g01600.1 (Oryza sativa), 5'ss of exon 2
TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgt-tagtactttgcagtttcttctgttatgtgtaattgcatctattagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacag
   ||  |||  | |||||||| | |||||| || || || ||||||||||||||||| ||||||||||| ||||| |  |  | |     || ||   |  |  |||||   || |||  |||   || ||  |    ||   |  ||| |  ||    ||    |  ||
CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgattttctttttcttttttactcttacgtaatgtaatgtat--gtc---gtctc-ctgctgaatattacattacattacatttcatcatgtag

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g64630.1 (Oryza sativa), 5'ss of exon 2
TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagt--actttgcagtttctt-------ctgtta---tgtgtaattgcatctattagtctcggtttcgt-tatcaaacgatttatttc-tataatgatctgtgtacag---------------
 |      | |  ||||||||| |   ||||||| || ||  |||||||||||||||| ||||||||||| |||||||||  | ||| | |   |         ||||||    |   |||||      | ||  ||  ||| |  |   ||   |||| |  |    || ||  ||   |                  
-AAACACTTGAGGGATGGCTGAAG---AGGATATCCAGCCTATTGTCTGTGACAATGGCACTGGAATGGTCAAGgttagttaattttcctgccacgctgtaaaactgttagttcgcacaattgggatgttcagattctcttttgcctgctaatacatttgtagcacccaacgaattgatcatttcttcatgtggaatag

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 5'ss of exon 2
TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgt-tagtactttgcagtttcttctgttatgtgtaattgcatctattagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacag
            | |||||||| | |||||| || || || ||||||||||||||||| ||||||||||| ||||| |  |  | |     || ||   |  |  |||||   || |||  |||   || ||  |    ||   |  ||| |  ||    ||    |  ||
-----------GAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgattttctttttcttttttactcttacgtaatgtaatgtat--gtc---gtctc-ctgctgaatattacattacattacatttcatcatgtag

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g61970.1 (Oryza sativa), 5'ss of exon 2
TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactttgcagtttcttctgttatgtgtaattgcatctattagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacag
          |   ||||| || | ||||||||| || || ||||| ||||||||||| ||||||||||| |||||| |    ||  |   |  ||  ||  || |  ||  ||  ||  |  |  |||  |||   |||  ||  ||  || | |   ||| | ||   
----------ATTAATGGCCGACGGTGAGGATATCCAGCCACTTGTATGTGACAATGGCACTGGAATGGTCAAGgtttgattcttataccattgtccatt-cgttttttttaattcat-ggaatgagtt--gttcaaaaataata-ataactctcactctctctctag--

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os11g06390.5 (Oryza sativa), 5'ss of exon 2
---TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactttgcagtttcttctgttatgtgtaattgc-atctattagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacag
    |||   | |  | |||||||| |  ||||| || || |||||||| ||||||||||||||||| ||||| |||||| ||  |   || |        || | ||||   |  |||     || |  ||    | |||  |   |||| || | |   ||  ||    |||
AACCAGT--AGGAGGAAATGGCTGACGGCGAGGACATCCAGCCCCTTGTGTGTGACAATGGAACTGGCATGGTCAAGgttcgtggtgctcattcgtagtatttctttgtagcagttatccccatgtttatgtgatttaatcgtatactttacttttcttgcgaattgctggcag

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os11g06390.6 (Oryza sativa), 5'ss of exon 2
-----------TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactttgcagtttcttctgttatgtgtaattgc-atctattagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacag
            |||   | |  | |||||||| |  ||||| || || |||||||| ||||||||||||||||| ||||| |||||| ||  |   || |        || | ||||   |  |||     || |  ||    | |||  |   |||| || | |   ||  ||    |||
GAATTCAGAACCAGT--AGGAGGAAATGGCTGACGGCGAGGACATCCAGCCCCTTGTGTGTGACAATGGAACTGGCATGGTCAAGgttcgtggtgctcattcgtagtatttctttgtagcagttatccccatgtttatgtgatttaatcgtatactttacttttcttgcgaattgctggcag

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g36290.2 (Oryza sativa), 5'ss of exon 2
TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactttgcagtttcttctgttatgtgtaattgcatctattagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacag
 |   |  | ||  |||||||| |   |||||||||||||  |||| || |||||||| ||||||||||| |||||   ||   || |  ||  ||| ||  |   |   | ||   ||  ||   | ||        ||||  | |  |   ||||| |          
-AACATC-TGAAGAATGGCTGACG---AGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcctg-aacttagtcttttcagcaaagcggtat--gttcctcatagctt--------aacggatcaccttcctaatgtttaacag----

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G030169_T03 (Zea mays), 5'ss of exon 1
---------------------------TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgt-----tagt-actttgcagtttcttctgttatg-tgtaattgcatctat-tagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacag
                           |  |||   | || |||||||| || ||||| ||||| ||||| |||||||||||||||||||||||||| |||||     ||||  ||| |||   | |||| | ||| |     |   || ||  ||  |     |  | |   || | || |   || |    |||| | || ||
ATTGTTTTCATTCATGCAGATTGCAGATCATTTAACATAA-ATGGCTGACGCAGAGGACATTCAGCCCCTAGTCTGTGACAATGGAACTGGAATGGTCAAGgtaactgtagtcgcttggcatcatattctctaatgattcctctttttccatacagcttttagattttcagtcaatg-ttaagcactttttccatctct-tatag

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G030169_T02 (Zea mays), 5'ss of exon 2
--------TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgt-----tagt-actttgcagtttcttctgttatg-tgtaattgcatctat-tagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacag
        |  |||   | || |||||||| || ||||| ||||| ||||| |||||||||||||||||||||||||| |||||     ||||  ||| |||   | |||| | ||| |     |   || ||  ||  |     |  | |   || | || |   || |    |||| | || ||
ATTGCAGATCATTTAACATAA-ATGGCTGACGCAGAGGACATTCAGCCCCTAGTCTGTGACAATGGAACTGGAATGGTCAAGgtaactgtagtcgcttggcatcatattctctaatgattcctctttttccatacagcttttagattttcagtcaatg-ttaagcactttttccatctct-tatag

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G126190_T02 (Zea mays), 5'ss of exon 2
TAGT-TTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactttgcagtttcttctgttatgtgtaattgcatctattagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacag
 |   |  |||| | |||||||| | |||||| ||||| |||||||| ||||||||||||||||| ||||| |||||| ||| ||    |||  | ||| ||  |   |||        |  |   | |    | |||| ||| ||| ||      |  | || |   |||
CATCATCAGTAACAAATGGCTGACGGTGAGGACATTCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAGgtttgtagttctt-gttcatgctggtacttcatattctgcaacctttttctgctaatttaatcacacgttttctt------acaaactattggcag

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G126190_T03 (Zea mays), 5'ss of exon 2
TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactttgcagtttcttctgttatgtgtaattgcatctattagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacag
        ||| | |||||||| | |||||| ||||| |||||||| ||||||||||||||||| ||||| |||||| ||| ||    |||  | ||| ||  |   |||        |  |   | |    | |||| ||| ||| ||      |  | || |   |||
--------TAACAAATGGCTGACGGTGAGGACATTCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAGgtttgtagttctt-gttcatgctggtacttcatattctgcaacctttttctgctaatttaatcacacgttttctt------acaaactattggcag

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G082484_T01 (Zea mays), 5'ss of exon 2
--------TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagt------actttgcagtttcttctgt-tatgtgtaattgcatctattagtctc---ggtttcgttatcaaacgat--ttat--ttctataatgatctgtgtacag
        |  |||   | || ||||||||  | ||||| ||||| ||||| |||||||||||||||||||||||||| ||||| | |      |||| ||    | |||| |  |  |    ||   ||    ||  |      |||  || |||  ||||  | ||  || |      |||| | || ||
ATTGCAGATCATTTAACATAA-ATGGCTGACTCAGAGGACATTCAGCCCCTAGTCTGTGACAATGGAACTGGAATGGTCAAGgtaattgtggccacttggcgtcatattctctgcagattcctttttttcaggcagcttttataatttaattttcagtcgatgttcattattttccccccatctct-tatag

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G053299_T01 (Zea mays), 5'ss of exon 2
TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactttgcagtttcttctgttatgtgtaattgcatctattagtctcg---gtttcgttatcaaacgatttatttctataatgatctgtgtacag
          |   |||||||| | ||||||||| || || ||||| ||||||||||| ||||||||||| |||||| |    | |   | ||| |  |  |   | ||| ||||| | |  |  |        ||| |   | || | |       |    ||| | | |||
----------ATCAATGGCTGACGGTGAGGATATCCAGCCACTTGTGTGTGACAATGGCACTGGAATGGTCAAGgttcgatgctcgttctatctaccatgttcattcatt-catctctgaaacctgtaaaggcagttgttgca-gaatgaccagcccatgcttctctctgcag

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G067985_T13 (Zea mays), 5'ss of exon 2
TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactttgcagtttcttctgttatgtgtaattgcatctattagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacag
 ||||  ||| || |||||||||| |||||| || || || |||||||| |||||||| ||||||||||| ||||| ||  |    |  |  |||     |  | || || ||  |||    ||   | |   | ||                                 
CAGTTCTGTAGAA-ATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAGgtcagcccccgtccctgactttgacaacctttacttccaaatatgccactaattatgtctgtcttttag---------------------------

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G110378_T03 (Zea mays), 5'ss of exon 3
TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactttgcagtttcttctgttatgtgtaattgcatctat-tagtctcggtttcgt-tatcaaacgatttatttctataatgatctgtgtacag
    ||  | | | |||||||||| |||||| || || || |||||||| |||||||| ||||||||||| ||||| ||  |         ||  |  | |     || |  || | |  |  ||   || |   |||   || | |||| | ||   |   || | |  ||
----TTCTTTAGAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAGgtcagcccccc-----ctcccccctgacccccaacttgatttgtacaaccttatttccaagtatgccactaattatgtgtaccttctactct-tctag

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G067985_T12 (Zea mays), 5'ss of exon 2
TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactttgcagtttcttctgttatgtgtaattgcatctattagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacag
   ||  ||| || |||||||||| |||||| || || || |||||||| |||||||| ||||||||||| ||||| ||  |    |  |  |||     |  | || || ||  |||    ||   | |   | ||                                 
---TTCTGTAGAA-ATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAGgtcagcccccgtccctgactttgacaacctttacttccaaatatgccactaattatgtctgtcttttag---------------------------

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G110378_T01 (Zea mays), 5'ss of exon 2
TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactttgcagtttcttctgttatgtgtaattgcatctat-tagtctcggtttcgt-tatcaaacgatttatttctataatgatctgtgtacag
            | |||||||||| |||||| || || || |||||||| |||||||| ||||||||||| ||||| ||  |         ||  |  | |     || |  || | |  |  ||   || |   |||   || | |||| | ||   |   || | |  ||
------------AAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAGgtcagcccccc-----ctcccccctgacccccaacttgatttgtacaaccttatttccaagtatgccactaattatgtgtaccttctactct-tctag

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G067985_T09 (Zea mays), 5'ss of exon 2
TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactttgcagtttcttctgttatgtgtaattgcatctattagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacag
            | |||||||||| |||||| || || || |||||||| |||||||| ||||||||||| ||||| ||  |    |  |  |||     |  | || || ||  |||    ||   | |   | ||                                 
------------AAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAGgtcagcccccgtccctgactttgacaacctttacttccaaatatgccactaattatgtctgtcttttag---------------------------

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G067985_T11 (Zea mays), 5'ss of exon 1
---------------------------TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactttgcagtttcttctgttatgtgtaattgcatctattagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacag
                            ||||  ||| || |||||||||| |||||| || || || |||||||| |||||||| ||||||||||| ||||| ||  |    |  |  |||     |  | || || ||  |||    ||   | |   | ||                                 
ATGATTCTATCCATATGCCACTTGCAGCAGTTCTGTAGAA-ATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAGgtcagcccccgtccctgactttgacaacctttacttccaaatatgccactaattatgtctgtcttttag---------------------------

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G006765_T02 (Zea mays), 5'ss of exon 2
------------TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactttgcagtttc-ttctgttatgtgtaattgcatctattagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacag
                |  |||  | |||||||| |  ||||| || || |||||||| ||||||||||||||||| ||||| |||||| ||| ||     |  |  |   | ||||  | |  |||   |  ||     |||  | |    || |  || |   |                 
TGTTTTTGTTCCAGAATCTGTAGCAAATGGCTGACGGCGAGGACATCCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAGgtttgtagttcttgttcacgctgcttcatgttcagtaacattgttctgtt--aatttaatcacatcacaaactactggcag----------------

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
lower sequence: AT1G49240.1 (Arabidopsis thaliana), 5'ss of exon 2
TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactttgcagtttcttctgttatgtgtaattgcatctattagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacag
     | ||| |  ||||| |||||||| || ||||||||  |||||||||||||||| ||||||||||| |||||||||   ||    ||||||   ||| |  |       ||| ||| | | ||     ||    |    ||  ||| |  |               
----ATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAGgttagtctcttc---tttcttactttaaggat-------tctcttaattttggcaagatttgatacaagttcctttgtgcag--------------

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactttgcagtttcttctgtta-tgtgtaattgcatctattagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacag
        | ||| ||||| |||| |||||||||||| || ||||||||||||||||||||||||||||||||||| |||  |   | |||| ||  | || ||| |  ||  | |  |   | | |     ||  | | || | | ||    ||  |  | | |  ||||
--------TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagt--tagactgtttatttagatactgtatggttctaaccttctttgttgtacatgt-gtaagactactgatcatgatttttgtatattaacag

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 5'ss of exon 3
TAGTTTGGTAAAAG-ATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactttgcagtttcttctgttatgtgtaattgcatctattagtctcggtttcgttatcaaacgattta-------tttctata--atgatctgtgtacag
     |  |||||| ||||| ||| |||| ||||| || ||||| ||||||||||||||||||||||||||||||||  ||  ||| |  | |    || ||||   | |||  | | ||  |  | | | |   |     | ||||        |||| ||   ||| | | | | |||
----GTAATAAAAGGATGGCCGATACTGAAGATATCCAGCCCCTCGTCTGTGACAATGGAACTGGAATGGTGAAGgtctgttgttt-ctttcttgcttgatatgcagatttgt-tgtgttgtttgctgctcctcaaatgctcaatttgaataagctttccatgttatgctttatatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209715056|gb|BW677099.1|BW677099
EST:     CTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG                         GCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTT
genomic: CTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactt ... ctgtgtacagGCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTT
EST: gi|213617789|gb|DB967600.1|DB967600
EST:     CTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG                         GCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTT
genomic: CTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactt ... ctgtgtacagGCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTT
EST: gi|192297835|gb|FG993159.1|FG993159
EST:     CTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG                         GCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTT
genomic: CTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactt ... ctgtgtacagGCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTT
EST: gi|209716758|gb|BW682240.1|BW682240
EST:     CTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG                         GCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTT
genomic: CTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactt ... ctgtgtacagGCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTT
EST: gi|209713856|gb|BW684049.1|BW684049
EST:     CTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG                         GCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTT
genomic: CTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactt ... ctgtgtacagGCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTT
EST: gi|213613929|gb|DB971046.1|DB971046
EST:     CTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG                         GCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTT
genomic: CTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactt ... ctgtgtacagGCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTT
EST: gi|193493563|gb|FK463547.1|FK463547
EST:     CTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG                         GCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCG-GTAT-GTT
genomic: CTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactt ... ctgtgtacagGCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTT
EST: gi|209728231|gb|BW651666.1|BW651666
EST:     CTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG                         GCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTT
genomic: CTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactt ... ctgtgtacagGCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTT
EST: gi|208181831|gb|GD979354.1|GD979354
EST:     CTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG                         GCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTT
genomic: CTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactt ... ctgtgtacagGCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTT
EST: gi|18710715|gb|BM522518.1|BM522518
EST:     CTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG                         GCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTT
genomic: CTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactt ... ctgtgtacagGCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTT
EST: gi|213588561|gb|DB957625.1|DB957625
EST:     CTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG                         GCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTT
genomic: CTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactt ... ctgtgtacagGCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTT
EST: gi|209712751|gb|BW681605.1|BW681605
EST:     CTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG                         GCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTT
genomic: CTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactt ... ctgtgtacagGCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgttagtactttgcagtttcttctgttatgtgtaattgcatctattagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacag

- - - - - - - - - - - - - GAGGAT