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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtatttgtatccatctgtttcaattcatagttttgtcatcacattgttctttccctgaatcaaatactttctgaaacag

Basic information

species Glycine max
transcript GLYMA04G39380.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os11g06390.6 (Oryza sativa), 5'ss of exon 3
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtatttgtatccatctgtttcaattcatagttttgtcatcacattgttctttccctgaatcaaatactttctgaaacag
|| || |||||||| |||||||||||||| ||||||||||| || |||||||| |||||||| || || |||||||| ||||| ||||| || |||||||||    | |      |||         || | ||||||   |     |   | | | | ||||     |   |  |||  |||
GAGAAGATGACCCAGATCATGTTTGAGACTTTCAATGTGCCAGCTATGTATGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactcactcacat-------ggttgagagttttaaaaaatattcactttattcatgaactg--ttgctcttgatgcag

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g61970.1 (Oryza sativa), 5'ss of exon 3
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtatttgtatccatctgtttcaattcatagttt------tgtcatcacattgttctttccctgaatcaaatactttctgaaacag----
|| |||||||||||||||||||||||||| |||||||  || || ||||||||||| || |||||||| || || |||||||| |||||||| ||||| ||  ||| |   | | |  || ||  || | |   |||      |  |||| | |  ||  |    |||  | | | | || ||          
GAGAAAATGACCCAAATCATGTTTGAGACATTCAATGCACCAGCAATGTATGTGGCTATTCAAGCTGTTCTTTCACTATATGCCAGTGGTCGTACAACAGgcatgtgtccattttctactattcaaaatgagtctttgtacacttacatctcttcattggtgatatgaccccagtgcgttgtggcttgtgcag

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g73310.1 (Oryza sativa), 5'ss of exon 3
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgt--------ttgtatttgtatccatctgtttcaattcatagttttgtcatcacattgttctttccctgaatcaaatactttctgaaacag---------
|| |||||||| || || ||||||||||| |||||||| |||||||||||||| || |||||||| || || || || ||||| ||||| || ||||| |||        || || ||   | | |   || |||||  | | ||  |   ||  |     ||    |  || | |       |||   ||         
GAGAAAATGACACAGATTATGTTTGAGACGTTCAATGTTCCTGCCATGTATGTTGCAATCCAAGCAGTGCTTTCACTCTATGCTAGTGGCCGAACAACAGgtatgtgatgttttacttaacttctttctttccaatttcttggttcttttgcatctatagattcatttagatgagagctcggatgattaagaactattct

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 5'ss of exon 3
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtatttgt--atccatctgtttcaattcatagttttgtcatcacattgttctttccctgaatcaaatacttt--ctgaaacag-------------
|| || |||||||| || ||||||||||| |||||||| ||||| ||||| || || ||||| || || || ||||| ||||| ||||| || || |||||| |||||      |||  | | ||| | ||||  |    |   |  |    || |   | || || |   || |   |||  | |              
GAGAAGATGACCCAGATTATGTTTGAGACTTTCAATGTCCCTGCAATGTACGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTGgtatgtatgaactcatctctgtcttttacttcaatgaggagggtttgctcaattatgcacttgtatgatccacctctgctgccatacacttttttttaat

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g36290.2 (Oryza sativa), 5'ss of exon 3
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtatttgtatccatctgtttcaattcatagttttgtcatcacattgttctttccctgaatca-aatactttctgaaacag
|| || ||||| || |||||||||||||||||||||   || || |||||||| || ||||| ||||| || ||| | ||||| || ||||| ||||||||| || |||  || |      || ||||  || || ||   ||  || |||  |       | | | | | ||||      |||
GAGAAGATGACACAGATCATGTTTGAGACCTTCAATTGCCCAGCAATGTATGTCGCAATCCAGGCTGTTCTATCCTTGTATGCTAGCGGTCGAACAACTGgtatg-attattacct-----ttgcaatagatcgtgttaaaatt-caatgtgttggggggcagtgacacttcttttatctgcag

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G126190_T02 (Zea mays), 5'ss of exon 3
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtatttgtatccatctgtttcaattcatagttttgtcatcacattgttctttccctgaatca--aatactttctgaaacag
|| || |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| || ||||| || || ||||| || |||||||||    |||  |   |||      ||| |   | ||  | | || ||   || |    || ||| |   ||   |  |    |||
GAGAAGATGACCCAAATCATGTTTGAGACCTTCAATGTTCCTGCCATGTATGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattctttaacatggtgaccaaatttca-ttaggacttcccaaatttttccatctcaattatggattgctgttccttcag

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G006765_T02 (Zea mays), 5'ss of exon 3
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtatttgtatccatctgtttcaattcatagttttgtcatcacattgttctttccctga-atcaaatac--tttctgaaacag
|| || ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| ||||| || ||||| || || ||||| || |||||||||    | | ||   |||      ||| |   | |        || ||| | |  ||      ||    | |  ||  | |  |||
GAGAAGATGACCCAAATCATGTTTGAGACTTTCAATGTTCCTGCCATGTATGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGACGTACAACTGgtaatgactcgttcacatggcgaccaaatttcattaggacttacaaattttcccatcttaattatgggttgctgttcatcattcag

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G067985_T13 (Zea mays), 5'ss of exon 3
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtatttgta--tccatctgtttca-attcat--agttttgtcatcaca----ttgttctttccctgaatcaaatactttctga--aacag------
|| || ||||||||||| ||||||||||| |||||||| |||||||||||||| || |||||||| || ||||| || ||||| ||||| || || |||||| ||   |  |   ||| |  ||||    || ||  |||||  |  |   |       |  | ||  |||  | ||||   | |    ||| |      
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTTCCTGCCATGTATGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctgatccttcctttagtttggcgttgattcagtttcatagttctagctagcatcatctctttgatcccaatatgctgttgtcaactgtttatc

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G030169_T02 (Zea mays), 5'ss of exon 3
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtatttgtatccatctgtttcaattcatagttttgtcatcacattgttctt--tccctgaatc--aaatactttctgaaacag--------------
||||| ||||| |||||||||||||| ||||||| ||| ||||| |||||||| || || |||||||| || ||||||||||| ||||| || || ||||||  ||  |   ||     |  ||  |||  | ||    |||||   ||| |||     |  |||||  ||  |        ||| |              
GAAAAGATGACACAAATCATGTTTGAAACCTTCAGTGTTCCTGCTATGTATGTTGCTATTCAAGCTGTGCTTTCCCTATATGCTAGTGGCCGTACCACTGgtaagtgatcaaataatcatcattttatttgt-gtgcattcatcttgttgctctggagtctggaatcttaatcatccagcagaactgaattgaccaatggt

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G067985_T03 (Zea mays), 5'ss of exon 2
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtatttgta-tccatctgtttcaa--ttcat--agttttgtcatcaca----ttgttctttccctgaatcaaatactttctga--aacag------
|| || ||||||||||| ||||||||||| |||||||| |||||||||||||| || |||||||| || || || || ||||| ||||| || || |||||| ||   |  |  | | | |  ||     || ||  |||||  |  |   |          | ||  |||  | ||||   | |    ||| |      
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTTCCTGCCATGTATGTTGCAATCCAAGCAGTTCTATCACTCTATGCTAGTGGGCGTACTACTGgtatgacctgatccttcctttactttggcgttgattcagtttcatagttctagctagcaacatctctttgatcccaatatgctgttgtcaactgtttatc

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G082484_T01 (Zea mays), 5'ss of exon 3
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtatttgtatccatctgt-ttcaattcatagttttgtcatcacattgttctttccctgaatca-aatactttctgaaacag------------------
||||| ||||| |||||||||||||| || |||| ||| ||||| |||||||| || || ||||||||||| ||||| ||||| ||||| || || ||||||  ||  |   ||  ||| |  ||  ||||||   |   |  |    || | ||   |  |||||  |||    | | ||  ||                  
GAAAAGATGACACAAATCATGTTTGAAACTTTCAGTGTTCCTGCTATGTATGTTGCTATTCAAGCTGTCCTTTCCCTTTATGCTAGTGGCCGTACCACTGgtaagtgatcaaata-atcagcattttattcatg--tacattctttttttttgctgctctggaatcttaatctagtataaactagttgaccaaaggtgaaata

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G053299_T01 (Zea mays), 5'ss of exon 3
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtatttgtatccatctgtttcaattcatagttttgtcatcacattgttctttccctgaatcaaatactttctga-aacag------------------------------------
|| || ||||||||||| ||||| ||||| |||||||  || || |||||||| || |||||||||||||| ||||| ||||| || |||||||| || ||   || |     | || || ||     | | ||||||   |  |||  ||   |        |||       |||||  |||                                     
GAGAAGATGACCCAAATTATGTTCGAGACATTCAATGCACCAGCAATGTATGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgtccactttcacctctta----ttaaagtttttctaggacaacgtctctgattctcgtcattggtgatctgacgacaccattctactacctatgtctcggtactctgtgtgcag

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G104017_T01 (Zea mays), 5'ss of exon 3
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtatt--tgtatccatctgtttcaat--tcat--agttttgtcatcacattgttctttccctgaatcaaatactttctgaaacag-----------
|| || |||||||| || ||||| ||||| |||||||| ||||||||||| || || || ||||| ||||| || || ||||| ||||| || || |||||| ||   |  |   ||| | |  |||| |  | ||  |||||| |  | |  |   |||||   |  || |    |||    |  ||            
GAGAAGATGACCCAGATTATGTTCGAGACTTTCAATGTTCCTGCCATGTACGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTGgtatgacctgctccttccttttagttcagtgttgatccagttttctagtaatctctctctttgtttccattaggctcttatcaacccaccaagtatcttt

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 3
lower sequence: AT1G49240.1 (Arabidopsis thaliana), 5'ss of exon 3
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtatttgtatccatctgtttcaatt---catagttttgtcatcacatt---gttctttccctgaatcaaatactttctgaaacag----------
|| || ||||| || ||||||||||||||||| |||   || || |||||||| ||||| |||||||| || || || || || |||||||| ||||| |||| || |   |||  || |     || |   || ||||||||  ||   ||    |  ||       ||  |  ||  |  ||||             
GAGAAGATGACTCAGATCATGTTTGAGACCTTTAATTCTCCAGCTATGTATGTTGCCATTCAAGCTGTTCTATCACTTTACGCCAGTGGTCGTACAACCGgttagt-tcattattaatgtcgagaaaatgaacaaagttttgttttctgtttttaatgattatgtcatattgatcacagt--gaaatgattttctttag

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 3
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 3
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtatttgtatccatctgtttcaattcatagttttgtcatcacattgttc---tttccctgaa-tcaaatactttctgaaacag
|| || ||||| || |||||||||||||| |||||||| |||||||||||||| ||||| || || || || || || ||||| |||||||| ||||| |||| ||  ||   || |    |  ||| ||  |||| | | |||   ||  |    ||| | | || ||     |||| || |||||
GAGAAGATGACTCAGATCATGTTTGAGACATTCAATGTCCCTGCCATGTATGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCGgttagttcttaactctaaacatc-caagtctgagttatattatcttcttacttgtatttacttaaagtcgttctctttttgtaacag

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 3
lower sequence: AT3G18780.1 (Arabidopsis thaliana), 5'ss of exon 2
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgta--tttgtatccatctgtttcaattcatagttttgtcatcacattgttctttccctgaatcaaatactttctgaaacag
|| || ||||| |||||||||||||||||||| ||    || || |||||||| |||||||||||||| |||||| | || || |||||||| ||||| |||| |||  |||    |  | |||||  | ||||    |  |||| |  |        | |||| |   ||  |   |  |||||
GAGAAGATGACTCAAATCATGTTTGAGACCTTTAACTCTCCCGCTATGTATGTCGCCATCCAAGCTGTTCTCTCCTTGTACGCCAGTGGTCGTACAACCGgttagtacattttaggctttttgtttatactcat----tgatcattatttgaactgagctctgatt---atcttccattgaacag

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 5'ss of exon 4
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtatttgtatccatctg--tttcaattcatagttttgtcatcacattgttctttc--cctgaatcaaa---tactttctgaaacag
||||| ||||| ||||||||||||||||| || |||||||||||||||||||| ||||| || ||||| || || |||||||| ||||| || |||||||||| |||||   |||  | ||  ||  ||||   | |||| |  ||   |||||  |    ||||| |   |   | ||   |  |  ||
GAAAAGATGACTCAAATCATGTTTGAGACTTTTAATGTGCCTGCCATGTATGTTGCCATTCAGGCTGTTCTTTCTCTATATGCCAGTGGGCGTACAACTGgttcgtattaaaatctttttggattggaattttcatttttcttttc-tgttgttagtgtagcctgagttctaacttgctcctttgactag

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 3
lower sequence: EDO98923 (Chlamydomonas reinhardtii), 5'ss of exon 5
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtatttgtatccatctgtttcaattcatagttttgtcatcacattgttctttccctgaatcaaatactttctgaaacag
               |||||||| ||||||||||| ||||| |||||||| ||||| ||||| |             |  |  |    |  |   ||| |    |   | |   |   | |   ||   |  ||        | |    |  |  | |   |        |            
---------------ATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAGgtgagag-------aggtcgagacagcggagtaacggccgcggcatcgcggcacgcggcagcagcccg-agccggacagtaaggcaggcccatacaacagcggtcggc------------

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 3
lower sequence: EFJ17401 (Selaginella moellendorffii), 5'ss of exon 2
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgta---tttgtatccatctgtttcaattcatagttttgtcatcacattgttctttccct----------gaatcaaatactttctgaaacag------------------------------------------------------
|| || |||||||| |||||||| |||||||||||||| || |||||||| ||||| |||||||| ||||| || || || || ||||| ||||| || ||| || |   ||| ||||| |   ||    |  | |   | ||     | |  |||||| | |          ||   | ||  |   | ||   |                                                      
GAGAAGATGACCCAGATCATGTTCGAGACCTTCAATGTCCCGGCCATGTACGTGGCGATCCAAGCAGTCCTTTCACTCTACGCGAGTGGACGCACTACCGgtatggagtttttttatcccttgcttgttctagacaagatggttgatgcgtgtttcttttcttcgttgcttgcgatagacatgatgcttcaagttggttctacttttgtttttccctctaacacgttgtatgatcgtggtttgtgatcag

upper sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 3
lower sequence: EFJ35077 (Selaginella moellendorffii), 5'ss of exon 2
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtatttgtatccatctgtttcaattcatagtt----ttgtcatcacattgttctttccct----------gaatcaaatactttctgaaacag-------------------------------------------------------
|| || |||||||| |||||||| |||||||||||||| || |||||||| ||||| |||||||| ||||| || || || || ||||| ||||| || ||| || | || | |   ||  || |   |  |||      | ||     | |  |||||| | |          ||   | ||  |   | ||   |                                                       
GAGAAGATGACCCAGATCATGTTCGAGACCTTCAATGTCCCGGCCATGTACGTGGCAATCCAAGCAGTCCTTTCACTCTACGCGAGTGGACGCACTACCGgtatggagttttttttttcctttgcttgttctagacaagatggttgatgcgtgtttcttttcttcgttgcttgcgatagacatgatgcttcaagttggttctacttttttttcttctctctaacacgttgtatgatcgtggtttgtgatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209715056|gb|BW677099.1|BW677099
EST:     TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTG                         GTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
genomic: TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtattt ... tctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
EST: gi|192297835|gb|FG993159.1|FG993159
EST:     TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTG                         GTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
genomic: TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtattt ... tctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
EST: gi|209716758|gb|BW682240.1|BW682240
EST:     TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTG                         GTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
genomic: TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtattt ... tctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
EST: gi|213613929|gb|DB971046.1|DB971046
EST:     TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTG                         GTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
genomic: TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtattt ... tctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
EST: gi|209728231|gb|BW651666.1|BW651666
EST:     TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTG                         GTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
genomic: TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtattt ... tctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
EST: gi|105635023|gb|DW247741.1|DW247741
EST:     TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTG                         GTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
genomic: TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtattt ... tctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
EST: gi|18710715|gb|BM522518.1|BM522518
EST:     TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTG                         GTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTAT
genomic: TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtattt ... tctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTAT
EST: gi|213588561|gb|DB957625.1|DB957625
EST:     TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTG                         GTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
genomic: TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtattt ... tctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
EST: gi|209712751|gb|BW681605.1|BW681605
EST:     TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTG                         GTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG
genomic: TGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtattt ... tctgaaacagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtatttgtatccatctgtttcaattcatagttttgtcatcacattgttctttccctgaatcaaatactttctgaaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG