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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattgttttgtttattgcaaattatctcttccacacgtgtaccaattagattgaactaaacatgttttggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTCCAAAAGAAATGCTTTAATGGTGAGTTATGTT

Basic information

species Glycine max
transcript GLYMA04G39380.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os01g73310.1 (Oryza sativa), 3'ss of exon 4
------------------------------------------------------------------------gtgattgttttgtttattgcaaattatctcttccacacgtgtaccaattagattgaactaaacatgttttggttt------tgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTCCAAAAGAAATGCTTTAATGGTGAGTTATGTT
                                                                         |  ||  |||||  |   ||| || | | ||  |    | | | |||     ||   |     || || |  ||        ||||||||||||||||||| ||| |||||||| ||||| ||| | ||||| |||||||||||||||| |||     |      | |    |  |  || |  |
gtaagtccttatcattacagcttcttagatgctcaccagaattagttcataactacttcataaccaatccattttgtttatttgtccacaccaagttgtatttta-atggttttgctaatgcacatgtgatttgtttgcttggcattgataaaaacagATGTGGATATCGAAGGATGAGTATGATGAATCTGGCCCAGCAATTGTTCACAGGAAGTGCTTCTGAGTTTCTCATGCTGCCCTGTGCGTCGGTTTGTACT

upper sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os11g06390.6 (Oryza sativa), 3'ss of exon 4
gtgattgttttgttta----ttgcaaattatctcttccacacgtgtaccaattagattgaactaaacatgttttgg------ttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTCCAAAAGA---AATGCTTTAATGGTGAGTTATGTT
|| |   ||  |  ||    ||   |  || |       || || |  |   |   |   |  |    | ||||||      |  | ||||||||||| || ||||| || ||||||||||| |||||| | ||||| ||| |||||||||||||||  |         |||   |||      ||  |    
gtaaaccttacgcctacactttatgaggtagcaagaatgcaggtatttctgctttctgttaacatcattcttttggcatctatgctacagATGTGGATCTCAAAGGGAGAGTATGATGAGTCGGGTCCAGCAATTGTTCACCGGAAGTGCTTCTAAGCTCTGGCTTTTTAATCGCTTATCTACAAGGCAG---

upper sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os01g64630.1 (Oryza sativa), 3'ss of exon 4
------------gtgattgttttgtttattgcaaattatctcttccacacgtgtaccaattagatt----gaactaaacatgtt---ttggttt--tgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTCCAAAAGAAATGCTTTAATGGTGAGTTATGTT
            |   |  | ||  || ||  |||||     ||| |    || | || || | |      ||||||  |  |    ||  |||    ||||||||||| || ||||  ||||| ||||| |||||||||  ||| ||||||| |||||||||||||||      | |    | ||    |      || |
gtctagtaatatgcactactatttcttctttgaaattggtatttctattgctg-atcattttgctctgcaaaactaatgacatccacttaatttgtcacagATGTGGATCTCCAAGGCCGAATACGATGAATCTGGTCCAGGCATCGTCCACATGAAGTGCTTCTAAGTTTGTGGGCAGATTTGTACCATTATCAGCTGAT

upper sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os03g61970.1 (Oryza sativa), 3'ss of exon 4
---------gtgattgttttgtt-tattgcaaattatctcttccacacgtgtaccaa---ttagattga---actaaacatgttttggtt----ttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTCCAAAAGAAATGCTTTAATGGTGAGTTATGTT---
          ||||| |    |  ||    | ||||    ||      |  | | ||   ||||||  |   ||| | | |||| |  ||    | ||||||||||||||| ||||| || |||||||| || || || || || ||||||||||| |||||||||  |    ||   |||| | |   |      |||    
atttgctatttgattatgccctaataaactagattacacattaattttgaatgcaaaatgttagataaagacacttatcctgttctttttcctgtcgcagATGTGGATATCTAAGGGAGAGTATGATGAATCCGGCCCTTCAATCGTCCACAGGAAATGCTTCTAATCC---GAGCCTTGCTCTGAGTATTTTCGGTGTGCCT

upper sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os05g36290.1 (Oryza sativa), 3'ss of exon 4
---------------gtgattgttttgtttattgcaa--attatctcttccacacgtgtacc---aattagattgaactaaacatgttttggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAG--TCCAAAAGAAATGCTTTAATGGTGAGTTATGTT
               |  | |||  |   |  ||  |  | | | | |    ||| | | |    ||| | ||   || |        || ||||  ||||||||||| || ||||| || |||||||| ||||||||   ||||||||| | ||||||||||| ||  ||      |  |  |  |  |||   | | |  
aagagacatagaaccggaagtgtaatagctgctgtcataactgtatttattgcacatatcctcagaatcacatctgacaacgataacatttgtttcacagATGTGGATCTCCAAGGGCGAGTATGATGAATCTGGTCCTGGCATTGTCCATATGAAGTGCTTCTGAGCTTCTTGCCAAGTTTGTAGAGCGGTATTTCAAG--

upper sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 4
---------------------------------gtgattgtt-----ttgtttattgcaaattatctct-----tccacacgtg-taccaattagattgaactaaacatgttttggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTCCAAAAGAAATGCTTTAATGGTGAGTTATGTT
                                  | ||||||     ||  ||  || ||  ||| |||     |  ||  ||| || ||  || | |    |  |  |  | | | |||||||||||||||||| ||||  || || || || ||||| ||| | |||||||||||||| ||||||| | |     |      ||    | || |  | |  |
gtaggaagctcctgttcatctgtagttgctacaataattgttaaactttactttctggaacatatgtctcatgattaacctgtggtaacatctaaaatctgttgtatgtcgtgttggtttgcagATGTGGATATCAAAGGACGAGTACGACGAATCTGGCCCAGCAATTGTCCACAGGAAATGCTTCTGATTTTCTCAAGTGCTCTGCTCTTGTCATCTGTAGT

upper sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os10g36650.1 (Oryza sativa), 3'ss of exon 4
----------gtgattgttttgtttattgcaaattatctcttccacacgtgtaccaattagattgaactaaacatgttttggttt-----tgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTCCAAAAGAAATGCTTTAATGGTGAGTTATGTT
           | ||      ||| |||    ||   || |       ||     ||     ||||  ||    | |||   |||     ||||||||||||| || | || ||| ||||| || ||||| ||| | || ||||||||||||||||||||  |       |  ||  |   |  ||||      |
gtaatgcaaaatcatccaacagttaattcttgatacactttctagattgttcgagaaggttcttgacatatgtttctttccttttttttgtgcagATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCT

upper sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G030169_T02 (Zea mays), 3'ss of exon 4
----------------------------------------------------gtgattgttttgtttattgcaaattatctcttccacacgtgtacc-----aattagattga-actaaa--catgttttggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGT-------CCAAAAGAAATGCTTTAATGGTGAGTTATGTT
                                                    ||||   |     | |  | |   | |       | | || ||       |  ||   ||| | |||   ||| ||||   | ||||||||||||| || | || ||| ||||| |||||||||||| | |||||||||||||||||||||||          |     ||||||| ||  |     |       
gtaacaccaagtcttccgacggctgttctgtatccacaatctatgtttatttgtgaaaatgcacctcacggtagggt-tgcggagaaaaggtttatttgtgaagctactctgacattaagtccatcttttccctgtgcagATGTGGATCTCAAGGGCTGAGTATGAGGAGTCTGGTCCAGCTATTGTCCACAGGAAGTGCTTCTAGACGTCACTCCTCGTGGAAATGCCTTTGTTTCATG-------

upper sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G082484_T01 (Zea mays), 3'ss of exon 4
------gtgattgttttgtttattgcaaattatctcttccacacgtgtaccaattaga---ttgaactaaa--catgttttggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTCCAAAAGAAATGCTTTAATGGTGAGTTATGTT---
         | | ||  |     |      |||||  |      || ||     |  |    |||  |||   | ||||||   | ||||||||||||| || | || ||| ||||| |||||||||||| | |||||||||||||||||||||||      |   |   || |||||  |    |        
gtaacaccaagttttccggcggctattctgtatctactatctgagtctattttgtgaagttctgacataagttcttgttttccctgtgcagATGTGGATCTCAAGGGCTGAGTATGAGGAGTCTGGTCCAGCTATTGTCCACAGGAAGTGCTTCTAGACGTCACCTA---GCCTTAATTCTCCTCTGGAAATAC

upper sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G104017_T04 (Zea mays), 3'ss of exon 4
---------------------------------gtgattgttttgtttattgcaaattatctcttccacacgtgtaccaatt--agattgaacta-aacatg-ttttggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTCCAAAAGAAATGCTTTAATGGTGAGTTATGTT--
                                 |   ||  |||||||      | | |  |  |  | | |  || || ||    |||    |   |  ||   ||| | |  |||||||||||||| ||||  || |||||||||||||| ||  | || |||||||||||||||||||| || |   |  | | | | | || |   |  | |   
gtatgcggttgtttatatctactttcagctgctgcacttcatttgttttaactcagtaacatggttgaaatg-ataacacttccgaattctgttgtgatgtggcattgatgtaccagATGTGGATATCCAAGGAGGAGTATGATGAGTCTGGCCCGGCAATCGTCCACAGGAAGTGCTTCTAGGTTCCGCA--AGTTCCTCATTGTTATCTAGTCTCAA

upper sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G110378_T05 (Zea mays), 3'ss of exon 4
-------------------------------gtgattgttttgtttattgcaaattatctcttccacacgt-gtaccaattagattgaactaaac-atgtt-ttggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTCCAAAAGAAATGCTTTAATGGTGAGTTATGTT
                               |   ||| ||| ||| |  |     || |     | ||   ||  |   |  |||    ||  | |||   ||| |||  |||||||||||||| ||||  || || ||||||||||| ||  | ||||| ||||||||||||||||| ||                                
gtatgggttgtttatattgctttcagctgctgcacttgatttctttttaactcccaatatggctgaaacaaagtcacgtctgaattctgttatgcgatgccattgatttaccagATGTGGATATCAAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAGGTT-------------------------------

upper sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G126010_T01 (Zea mays), 3'ss of exon 4
---------------gtgattgttttgtttattgcaa-attatctcttccacacgt-gtaccaattagattgaactaaacatgt---tttggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTCCA--AAAGAAATGCTTTAATGGTGAGTTATGTT
               |       | | ||| |||||     ||  ||| ||| | |  |   ||||  |||    | |  |||      ||  || |||||||||||| || ||||| || ||||| ||  |||||||   ||||||||||| |||||||||||||||        |||||  ||  |     |   |    
attactagtgtgatagcaccgaatatttttcttgcattgccattacttgcactcattattttaatttcatttctttgacaatgggcaactgtgttggcagATGTGGATCTCCAAGGGAGAGTATGACGAAACTGGTCCGGGCATTGTCCACATGAAGTGCTTCTAAGTTTTTTTGGGAAATTTTTCCAAAAAAAAAAAGA--

upper sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G067985_T05 (Zea mays), 3'ss of exon 5
----------------gtgattgttttgtttattgcaaattatctcttcca-cacgtgtaccaattagattgaacta-----------------aacatgtt-ttggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTCCAAAAGAAATGCTTTAATGGTGAGTTATGTT
                 |  |  |||    |  ||||  |||| |||   | | ||| |    || | |   ||  |                  || ||   ||| |||  |||||||||||||| ||||  || || ||||||||||| ||  | ||||| ||||||||||||||||| |                                 
gtatgttgtattgtttatattactttcagctgctgcattttatttctctgaactcgtattatgatgaaacgaaataacttctgagttctgttatgacgtgcccttgatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAGGCT-------------------------------

upper sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G067985_T02 (Zea mays), 3'ss of exon 4
----------------gtgattgttttgtttattgcaaattatctcttcca-cacgtgtaccaattagattgaacta-----------------aacatgtt-ttggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTCCAAAAGAAATGCTTTAATGGTGAGTTATGTT--
                 |  |  |||    |  ||||  |||| |||   | | ||| |    || | |   ||  |                  || ||   ||| |||  |||||||||||||| ||||  || || ||||||||||| ||  | ||||| ||||||||||||||||| |      |  | | | | |  | ||  |  | |   
gtatgttgtattgtttatattactttcagctgctgcattttatttctctgaactcgtattatgatgaaacgaaataacttctgagttctgttatgacgtgcccttgatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAGGCTTCGCA--AGTTCCTCATCGTTGCCTAGTCTCAA

upper sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G110378_T04 (Zea mays), 3'ss of exon 5
-------------------------------gtgattgttttgtttattgcaaattatctcttccacacgt-gtaccaattagattgaactaaac-atgtt-ttggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTCCAAAAGAAATGCTTTAATGGTGAGTTATGTT
                               |   ||| ||| ||| |  |     || |     | ||   ||  |   |  |||    ||  | |||   ||| |||  |||||||||||||| ||||  || || ||||||||||| ||  | ||||| ||||||||||||||||| ||       || | | | ||  |    |   |||
gtatgggttgtttatattgctttcagctgctgcacttgatttctttttaactcccaatatggctgaaacaaagtcacgtctgaattctgttatgcgatgccattgatttaccagATGTGGATATCAAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAGGTTTCTGCCAAGTTCGTCAAGTGCTTTTAGGGTT

upper sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G067985_T07 (Zea mays), 3'ss of exon 4
----------------gtgattgttttgtttattgcaaattatctcttcca-cacgtgtaccaattagattgaacta-----------------aacatgtt-ttggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTCCAAAAGAAATGCTTTAATGGTGAGTTATGTT
                 |  |  |||    |  ||||  |||| |||   | | ||| |    || | |   ||  |                  || ||   ||| |||  |||||||||||||| ||||  || || ||||||||||| ||  | ||||| |||||||||||||||||                                   
gtatgttgtattgtttatattactttcagctgctgcattttatttctctgaactcgtattatgatgaaacgaaataacttctgagttctgttatgacgtgcccttgatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAG----------------------------------

upper sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G126190_T02 (Zea mays), 3'ss of exon 4
--------------------gtgattgttttgtt--tattgcaaattatctcttccacacgt-gtaccaattagattgaact-----aaacatgttttggtttt--------gcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTCCAAAAGAAATGCTTTAATGGTGAGTTATGTT-
                    || ||| |   |||  ||| ||||||  ||    |     || || ||| | || |     |     ||||||| | | || ||         ||||||||||| || |||| ||| || |||||||| || ||| | ||||| ||| |||||||||||||||  |||  |     |||           |||||  
gttaaaaccttataacacttgttattttccagttgctatggcaaatattccaacctttcggtagttccagtaagctcttggttctaaaaacatgctctcgtatttatatgctacagATGTGGATCTCAAAGGCTGAGTACGATGAGTCAGGACCAGCGATTGTTCACCGGAAGTGCTTCTAAGCTCAAGGGCCCC-CTTCGTCCCCATTCTATGTAT

upper sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G053299_T01 (Zea mays), 3'ss of exon 4
----------------gtgattgttttg--tttattgcaaattatctcttccacacgtgtaccaattagattg--aactaaacatgttttggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGT---CCAAAAGAAATGC-TTTAATGGTGAGTTATGTT
                || || | | ||   | ||  |   | || | | |      |  ||    |||  |    |||  |    ||||| | ||||||||||||||||| |||| ||| || ||||||||||| ||  | || |||||| | || ||||||| ||    | |   |    || ||| || | | || |    
taagttgtcgccgtaggtcatggatatgaactgatcacttttaatgtttactgtttcttcacggtataggcttcttactccaataattttgctgttgcagATGTGGATATCCAAGGATGAGTACGATGAGTCTGGCCCTGCTATCGTCCACCGAAAATGCTTCTGAGCTAGCTATCTGCCGCGCCTTTCATAGCGTGTCA----

upper sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 4
------gtgattgttttgtttattgcaaattatctcttccacacgtgtacca---attagattgaactaaacatgttttggttttg---------cagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTCCAAAAGAAATGCTTTAA-TGGTGAGTTATGTT---
       |     ||  |  | ||  ||| | ||   ||||    || | ||    | | | |     ||   ||||||| || ||         ||||||||||| || ||| |||| || |||||||| |||||||| ||||| |||||||| |||||||||||      |   ||  |||  ||||  ||  || |   
gtaaaaatcccaattccgcctctttaaaactttcagctccatttatgaaacatgagtgaaaatactgaaattttgttttgtttgtgtgtgtgaatcagATGTGGATTTCAAAGAGTGAGTACGATGAGTCAGGTCCATCGATTGTTCACAGGAAATGCTTCTAAGTGT----GTCTTGTCTTATCTGGTTCGTGGTGGTGAG

upper sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 3'ss of exon 5
gtgattgttttgtttattgcaaattatctcttccacacgtgtaccaattagattgaacta----aacatg--ttttggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTCCAAAAGAAATGCTTTAATGGTGAGTTATGTT--
||||||  ||  ||| |||    |  | | | | |   || |     ||  |||| |  |    ||||||  ||||| |  | ||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  || | || |||||| ||||||||||   ||  
gtgatt--ttcattttttgtttttggtttttacaaatggtttgattcttttattgcatgatactaacatgctttttgttggtacagATGTGGATCTCAAAGGGTGAATATGATGAATCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGT--AATACAAGTGCTTTGATGGTGAGTTCCTTTTT

upper sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 5
---------------------------------------------------gtgattgttttgtttattgcaaattatctcttccacacgtgtaccaattagattg-aactaaacatgttt-----tggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTCCAAAAGAAATGCTTTAATGGTGAGTTATGTT-
                                                    | ||   ||||||| || |||||  || | |        |    |||     || || | ||   ||||     | ||  |||||||||||||  |||||   || || |||||||| |||||||| ||||| ||||||||||| |||||   |     || |    ||  || |   ||  |   
gtaatgtatttgactcgtgtctgagttgcatttcgtgtttttttttatgtcttcatgtctttgtttctt-caaatgctcgcgtttgtcgaggctgtaatctttctggaatttaatccgtttacttgttgtggtgcagATGTGGATTGCGAAGTCGGAGTACGATGAGTCAGGTCCATCAATTGTGCACAGGAAGTGTTTCTAGAGCAGTGCGACACATCTTT-TGCTTTTTTCAGCAC

upper sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ35077 (Selaginella moellendorffii), 3'ss of exon 3
gtgattgttttgtttattgcaaattatctcttccacacgtgtaccaattagattgaactaaacatgttttggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTCCAAAAGAAATGCTTTAATGGTGAGTTATGTT
                |  || |  || ||||   | ||| |  |   |         |   | | || |  ||| ||||||||||||  | |||   || || |||||||| |||||||| ||||| ||||| |||||||||||                                   
---------------gtaccacaacat-tcttttgctcgtttttcttatcagccttgtttttctttttcttttttcgcagATGTGGATTGCAAAGTCCGAGTACGATGAGTCGGGTCCATCGATTGTGCACAGAAAGTGCTTCTAG----------------------------------

upper sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ17401 (Selaginella moellendorffii), 3'ss of exon 3
gtgattgttttgtttattgcaaattatctcttccacacgtgtaccaattagattgaactaaacatgttttggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTCCAAAAGAAATGCTTTAATGGTGAGTTATGTT
                |  || |  || ||||   | ||| |  |   |         |   | | ||    | | ||||||||||||  | |||   || || |||||||| |||||||| ||||| ||||| |||||||||||                                   
---------------gtaccacaacat-tcttttgctcgtttttcttatcagccttgtttttctttttcgtttctcgcagATGTGGATTGCAAAGTCCGAGTACGATGAGTCGGGTCCATCGATTGTGCACAGAAAGTGCTTCTAG----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13252304|gb|BG363207.1|BG363207
EST:     GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
genomic: GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttt ... ggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
EST: gi|26059734|gb|CA802648.1|CA802648
EST:     GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
genomic: GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttt ... ggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
EST: gi|208062241|gb|GD858919.1|GD858919
EST:     GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
genomic: GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttt ... ggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
EST: gi|21602335|gb|BQ612666.1|BQ612666
EST:     GGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
genomic: GGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttt ... ggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
EST: gi|208055901|gb|GD851998.1|GD851998
EST:     GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
genomic: GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttt ... ggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
EST: gi|193675632|gb|FK615698.1|FK615698
EST:     GNGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
genomic: GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttt ... ggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
EST: gi|19937773|gb|BQ081416.1|BQ081416
EST:     GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
genomic: GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttt ... ggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
EST: gi|214009896|gb|DB988012.1|DB988012
EST:     GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCGAC
genomic: GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttt ... ggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
EST: gi|209715057|gb|BW677100.1|BW677100
EST:     GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
genomic: GTGTTTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttt ... ggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
EST: gi|208239711|gb|GE036739.1|GE036739
EST:     GGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATATCGAGGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC
genomic: GGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGgtgattgttt ... ggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctcttccacacgtgtaccaattagattgaactaaacatgttttggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTCCAAAAGAAATGCTTTAATGGTGAGTTATGTT
                              aactaaa  putative branch site (score: 2)
                    aattagatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgattgttttgtttattgcaaattatctcttccacacgtgtaccaattagattgaactaaacatgttttggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTCCAAAAGAAATGCTTTAATGGTGAGTTATGTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA