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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatagaaaataaacgtaatcttcaaagtctgtaagtggctgggttctgcagattgtctattcaaacttgttaatactggcaatttgttctatgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG

Basic information

species Glycine max
transcript GLYMA04G39380.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os10g36650.1 (Oryza sativa), 3'ss of exon 1
----tatagaaaataaacgtaatcttcaaagtctgtaagtggctgggttctgcagattgtctattcaaacttgttaatactggcaatttgttctatgc-atacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG
    | |  |  || || ||    |||||    |  |  |  |||  ||   |  || |||| |  ||||    |  |       |||| || | ||  || |||     |   || | |||||||| || ||||| ||||| ||||||||||||||||||||||| |||||||| |||
tgtttttgtaggatgaatgtttagttcaag--ttacatttttctgtattaatct-atagtctttgtaaac--actgttttgaatgatttattttgtgttatgcagATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os01g73310.1 (Oryza sativa), 3'ss of exon 1
tatagaaaat--aaacgtaatcttcaaagtct-gtaagtggctgggttc-tgcagattgtctattcaaacttgttaatactggca-atttgttctatgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG
   || |  |  | |  |  ||| || ||| | |||| |  |        |     || | | ||   | |||  ||   |  |    |  || | |    | ||||  |   ||  | |||||||| | ||||||||| || || ||||||||||||||||| ||||||||||| |||
---agcacctcaagatttcctctgcacagtatagtaactatcgaaaaagatattatttctttgtttttaattgacaaccttcacgtgctacttatttttgcagAGTAAATCTATAGGAAATGGCTGACGGTGAGGATATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 1
tatagaaaataaacgtaatcttcaaagtctgtaagtggctgggttctgcagattgtctattcaaacttgttaatactggc-aatttgttctatgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG
        || |   || |     || |  ||  || |  | ||| |  ||      |  |||  |    || |||| |  ||  | ||   |   | |||   ||  |||  | |||||||| | |||||| || || || ||||||||||||||||| ||||||||||| |||
--------atgatt-tagttgaagaaatgcgtc-gtcgtcgagttgtatagcaacaatgatcaggc--actactacttgttaaagtattaactctctgcagctcttctgtagGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os05g01600.1 (Oryza sativa), 3'ss of exon 1
--tatagaaaataaacgtaatcttcaaagtctgtaagtggctgggttctgcagattgtctattcaaacttgttaatactggc-aatttgttctatgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG
  ||   |  |   |  || |     || |  ||  || |  | ||| |  ||      |  |||  |    || |||| |  ||  | ||   |   | |||   ||  |||  | |||||||| | |||||| || || || ||||||||||||||||| ||||||||||| |||
agtactcatcaatgatttagttgaagaaatgcgtc-gtcgtcgagttgtatagcaacaatgatcaggc--actactacttgttaaagtattaactctctgcagCTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os03g61970.1 (Oryza sativa), 3'ss of exon 1
tatagaaaataaacgtaatcttcaaagtctgtaagtggctgggttctgcagattgtctattcaaacttgttaatactggcaatttgttctatgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG
     |  |||    |   || |||    | ||    |     |  |  | ||| | |  |  |||  || |||  |||  ||  |   ||||  | |  |  |  | | ||   |||| || | ||||||||| || || ||||| ||||||||||| ||||||||||| |||
----aatcatagttctggcctgcaactagtctagcaagaaatatggtaaaaatt-tattctgtaacaagtaaatgatggagat--ggcttatgatttccttgttcagATTAA---TGGCCGACGGTGAGGATATCCAGCCACTTGTATGTGACAATGGCACTGGAATGGTCAAG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G030169_T02 (Zea mays), 3'ss of exon 1
tatagaaaataaacgtaatcttcaaagtc--tgtaagtggctgggttctgcagattgtctattcaaacttgttaatactggcaatttgttct-----atgcatacagTAGTTTGGTAAA---AGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG
||  | | || | | |  ||| |         |||| | ||     | ||   |  ||||    |||  || |  | |||  || ||||| |     ||||| |  | || |   | ||   | |||||||| || ||||| ||||| ||||| |||||||||||||||||||||||||| |||
ta-ggcacatcagccttttctcccttactgaagtaattagcacatatttgtctacagtcttggtaaa--tgcttctcctgataaattgttttcattcatgcagATTGCAGATCATTTAACATAAATGGCTGACGCAGAGGACATTCAGCCCCTAGTCTGTGACAATGGAACTGGAATGGTCAAG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G126190_T03 (Zea mays), 3'ss of exon 1
tatagaaaataaacgtaatcttcaaagt-ctgtaagtggctgggttctgcagattgtctattcaaacttgttaatactggcaatttgttctatgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG
    ||||||  |  ||||    ||  | ||||       || | |    |   ||| || | |  |||  |      |    ||||||| | |||| ||     |  |||| | |||||||| | |||||| ||||| |||||||| ||||||||||||||||| ||||| |||
-gctgaaaatgcagctaataccaaacttgctgtttcctattgagatagatattctgt-tacttatcctttgtctcctcgtgtttttgttcca-gcat-ca-----tcagTAACAAATGGCTGACGGTGAGGACATTCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G082484_T01 (Zea mays), 3'ss of exon 1
tatagaaaataaacgtaatcttcaaa--gtctgtaagtggctgggttctgcagattgtctattcaaacttgttaatactggcaatttgttctatgcatacag-
| |      |     || |   ||||  || || | ||    | | | ||  |   ||||    |||  ||||  |  ||| || || || ||| ||| |||     || |   | ||   | ||||||||  | ||||| ||||| ||||| |||||||||||||||||||||||||| |||
tgtcattccttgtgctattgcacaaatcgtttgcatgtattggagctttggtgtcagtcttagtaaa--tgttgctcatggtaactttttttattcatgcagATTGCAGATCATTTAACATAAATGGCTGACTCAGAGGACATTCAGCCCCTAGTCTGTGACAATGGAACTGGAATGGTCAAG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G126190_T02 (Zea mays), 3'ss of exon 1
--------tatagaaaataaacgtaatcttcaaagt-ctgtaagtggctgggttctgcagattgtctattcaaacttgttaatactggcaatttgttctatgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG
        |   ||||||  |  ||||    ||  | ||||       || | |    |   ||| || | |  |||  |      |    ||||||| | |||| ||     |  |||| | |||||||| | |||||| ||||| |||||||| ||||||||||||||||| ||||| |||
gtttcctttgctgaaaatgcagctaataccaaacttgctgtttcctattgagatagatattctgt-tacttatcctttgtctcctcgtgtttttgttcca-gCAT-CA-----TCAGTAACAAATGGCTGACGGTGAGGACATTCAGCCCCTTGTTTGTGACAATGGAACTGGCATGGTCAAG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 1
-------tatagaaaataaacgtaatcttcaaagtctgtaagtggctgggttctgcagattgtctattcaaacttgttaatactggcaatttgttctatgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG
        ||  |||   |  ||    ||  ||     ||     |         |  ||     |   | |  ||   || ||  | || ||       | | ||| ||||  ||| || |||||||||| |||||| || || || |||||||| |||||||| ||||||||||| |||
gcatgcacattcaaatccactgttccttttcaaccacatagtgaaccaaaacactctcatcactgagcgatatatg---attctatccatatgcc----acttgcagCAGTTCTGTAGAA-ATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 2
tatagaaaataaacgtaatcttcaaagtctgtaagtggctgggttctgcagattgtc--tattcaaacttgttaatactggcaatttgttctatgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG
 | |   | |   | |  || |  |  | |  || |       ||       | ||   ||||  |   | |  ||| || ||  |||     ||| | ||||  ||| |    | |||||||||| |||||| || || || |||||||| |||||||| ||||||||||| |||
caaatccagtcttccttttcattcacatgttgaactaaaacactttcatcactggttggtatttgattctatccata-tgccacattgccgcttgc-tgcagTTCTTTAG----AAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G110378_T01 (Zea mays), 3'ss of exon 1
tatagaaaataaacgtaatcttcaaagtctgtaagtggctgggttctgcagattgtc--tattcaaacttgttaatactggcaatttgttctatgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG
         |   | |  || |  |  | |  || |       ||       | ||   ||||  |   | |  ||| || ||  |||      || | | | ||||   || || |||||||||| |||||| || || || |||||||| |||||||| ||||||||||| |||
--------gtcttccttttcattcacatgttgaactaaaacactttcatcactggttggtatttgattctatccata-tgccacattgcc----gcttgctgcagttctttagAA-ATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G067985_T12 (Zea mays), 3'ss of exon 1
----tatagaaaataaacgtaatcttcaaagtctgtaagtggctgggttctgcagattgtctattcaaacttgttaatactggcaatttgttctatgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG
     ||  |||   |  ||    ||  ||     ||     |         |  ||     |   | |  ||   || ||  | || ||       | | ||| ||||  ||| || |||||||||| |||||| || || || |||||||| |||||||| ||||||||||| |||
tgcacattcaaatccactgttccttttcaaccacatagtgaaccaaaacactctcatcactgagcgatatatg---attctatccatatgcc----acttgcagcagTTCTGTAGAA-ATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G053299_T01 (Zea mays), 3'ss of exon 1
tatagaaaataaacgtaatcttcaaag---tctgtaagtggctgggttctgcagattgtctattcaaacttgttaatactggcaatttgttctatgcatacagTAGTTTGGTAAAA-GATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG
            || |||  ||| |||   |||   |    || ||||    | |||||   ||  |||  || |||| | |  ||    |||      | | |   |  | | |   |||||||| | ||||||||| || || ||||| ||||||||||| ||||||||||| |||
------------acttaaatttccaagccatctagcatgaactaggttaaaaaaattgtgcttt--aacaagtgaatatttgagatggtctctgaattcagattgtctgtgcagATCAATGGCTGACGGTGAGGATATCCAGCCACTTGTGTGTGACAATGGCACTGGAATGGTCAAG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G067985_T09 (Zea mays), 3'ss of exon 1
tatagaaaataaacgtaatcttcaaagtctgtaagtggctgggttctgcagattgtctattcaaacttgttaatactggcaatttgttctatgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG
     |||   |  ||    ||  ||     ||     |         |  ||     |   | |  ||   || ||  | || ||       | | ||| ||||  ||| || |||||||||| |||||| || || || |||||||| |||||||| ||||||||||| |||
----caaatccactgttccttttcaaccacatagtgaaccaaaacactctcatcactgagcgatatatg---attctatccatatgcc----acttgcagcagttctgtagAA-ATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 1
lower sequence: AT3G18780.1 (Arabidopsis thaliana), 3'ss of exon 1
-tatagaaaataaacgtaatcttcaaagtctgtaagtggctgggttctgcagattgtctattcaaacttgttaatactggcaatttgttctatgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG------------------------------
  |     |  |   ||| | |   | ||     ||        ||||| |     ||       | |||    || ||     || || | ||  | |||     |  ||||| |||||||| ||||| |||||||||||  | || ||||||||||| || || |||||||||                              
gaaactttaggatttgtagtgtcgtacgttgaacagaaagctatttctg-attcaatcagggtttatttgactgtattgaactctttttgtgtgtttgcagC----TCATAAAAAATGGCTGAGGCTGATGATATTCAACCAATCGTGTGTGACAATGGTACCGGTATGGTGAAGGCTGGATTTGCAGGAGATGATGCTCCCAGG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 1
lower sequence: AT1G49240.1 (Arabidopsis thaliana), 3'ss of exon 1
tatagaaaataaacgtaatcttcaaagtctgtaagtggctgggttctgcagattgtctattcaaacttgttaatactggcaatttgttctatgcatacagTAGTT--TGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG
 || |||  | ||  || || | || |        ||| | | ||  |||    || | |||    || |  ||   |         | ||||  |    | |    | ||| |  ||||| |||||||| || ||||||||  |||||||||||||||| ||||||||||| |||
-attgaat-tgaatctactcatgaatgaa-aagcctggtttgattaagcaa---gtgttttcggttttctcgatcaagattcagatctttatgtttttgattgcagATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 1
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 1
tatagaaaataaacgtaatcttcaaagtctgtaagtggctgggttctgcagattgtctattcaaacttgttaatactggcaatttgttctatgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG
   |  |||      |||||||| ||     ||||| |     |  | |   ||  ||     | ||| |  |         |  |||  ||        |  ||| || ||| ||||| |||| |||||||||||| || |||||||||||||||||||||||||||||||||
---aataaacgctgctaatcttcgaaac---taagttgtgatctgattcgtgtttacttcatgagcttatccaattcatt--tcggtttcattttactttttttttagTGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAG

upper sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 3'ss of exon 2
tatagaaaataaacgtaatcttcaaagtctgtaagtggctgggttctgcagattgtcta-ttcaaacttgttaatact--ggcaatttgttctatgcatacagT--AGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG
        ||  |  | ||||  |||  ||  ||  |      ||   ||    |   |  | ||||||  | |||||  | |   |   |  ||   |    |  || |    ||| |||||| ||| |||| ||||| || ||||| ||||||||||||||||||||||||||||||
--------atggaaattatctgaaaaagctaaaaaggtgaatatttgtcaagcagcaaaacttaaactttgttatactttgtcccctgacttcatatttctcatgcagGTAATAAAAGGATGGCCGATACTGAAGATATCCAGCCCCTCGTCTGTGACAATGGAACTGGAATGGTGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209715056|gb|BW677099.1|BW677099
EST:     ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAG                         TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
genomic: ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAGgtattcatct ... atgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
EST: gi|213617789|gb|DB967600.1|DB967600
EST:     ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAG                         TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
genomic: ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAGgtattcatct ... atgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
EST: gi|192297835|gb|FG993159.1|FG993159
EST:     ATCACCGGAGAGAGAGTGAGTGC-AAGCCATCGTCTTCTTCTCAGACAAG                         TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
genomic: ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAGgtattcatct ... atgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
EST: gi|209716758|gb|BW682240.1|BW682240
EST:     ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGAC-A-                         -AGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
genomic: ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAGgtattcatct ... atgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
EST: gi|209713856|gb|BW684049.1|BW684049
EST:     ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAG                         TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
genomic: ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAGgtattcatct ... atgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
EST: gi|213613929|gb|DB971046.1|DB971046
EST:     ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAG                         TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
genomic: ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAGgtattcatct ... atgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
EST: gi|193493563|gb|FK463547.1|FK463547
EST:     ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAG                         TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
genomic: ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAGgtattcatct ... atgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
EST: gi|209728231|gb|BW651666.1|BW651666
EST:     ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAG                         TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
genomic: ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAGgtattcatct ... atgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
EST: gi|208181831|gb|GD979354.1|GD979354
EST:     ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAG                         TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
genomic: ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAGgtattcatct ... atgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
EST: gi|18710715|gb|BM522518.1|BM522518
EST:     ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAG                         TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
genomic: ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAGgtattcatct ... atgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
EST: gi|213588561|gb|DB957625.1|DB957625
EST:     ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAG                         TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
genomic: ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAGgtattcatct ... atgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
EST: gi|209712751|gb|BW681605.1|BW681605
EST:     ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAG                         TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG
genomic: ATCACCGGAGAGAGAGTGAGTGCAAAGCCATCGTCTTCTTCTCAGACAAGgtattcatct ... atgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcagattgtctattcaaacttgttaatactggcaatttgttctatgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG
                      tgttaat  putative branch site (score: 3)
                     ttgttaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tatagaaaataaacgtaatcttcaaagtctgtaagtggctgggttctgcagattgtctattcaaacttgttaatactggcaatttgttctatgcatacagTAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - -aaaataa
- - - - - - - - - - - - - - ctgtaag
- - - - - - - - - - - - - - - - - - ggctggg
- - - - - - - - - - - - - - - - - - - - - -ttctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atactgg