1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGATGGGCCAGCCCATGGGCCCCTACCGCGTGTGGCTGCAGTACGCGTGGATTCCGGGCCTGGCCATGAGCAGGGCGCTTGGTGATGTCCTGGCACACCAgtgagtcccggggcaagtggtcaatgctcgatacctgttctgtgcgtcaccgctttcctgccatgcatggttaggaggatgtaaaagttgcccttgcctt...
species | Chlamydomonas reinhardtii |
transcript | EDP09786 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATTCCGGGCCTGGCCATGAGCAGGGCGCTTGGTGATGTCCTGGCACACCA GGTGGGTGTGACGTCGGAGCCGGACCACTCGACCATGGAGCTGACGCCGCAEST: gi|14234787|gb|BG853603.1|BG853603
genomic: ATTCCGGGCCTGGCCATGAGCAGGGCGCTTGGTGATGTCCTGGCACACCAgtgagtcccg ... tgactcacagGGTGGGTGTGACGTCGGAGCCGGACCACTCGACCATGGAGCTGACGCCGCA
EST: AATCCGAGCCTGACCATGAGCAGGGCGCTTGGTGATGTCCTGGCACACCA GGTGGGTGTAACGTCGGAGCCGGACCACTCGTCCATGGAGCTGACGCCGCAEST: gi|23366894|gb|BU654713.1|BU654713
genomic: ATTCCGGGCCTGGCCATGAGCAGGGCGCTTGGTGATGTCCTGGCACACCAgtgagtcccg ... tgactcacagGGTGGGTGTGACGTCGGAGCCGGACCACTCGACCATGGAGCTGACGCCGCA
EST: ATTCCGGGCCTGGCCATGAGCAGGGCGCTTGGTGATGTCCTGGCACACCA GGTGGGTGTGACGTCGGAGCCGGACCACEST: gi|14234788|gb|BG853604.1|BG853604
genomic: ATTCCGGGCCTGGCCATGAGCAGGGCGCTTGGTGATGTCCTGGCACACCAgtgagtcccg ... tgactcacagGGTGGGTGTGACGTCGGAGCCGGACCAC
EST: ATTCCGGGCCTGGCCATGAGCAGGGCGCTTGGTGATGTCCTGGCACACCA GGTGGGTGTGACGTCGGAGCCGGACCACTCGACCATGGAGCTGACGCCGCAEST: gi|16072868|gb|BI874864.1|BI874864
genomic: ATTCCGGGCCTGGCCATGAGCAGGGCGCTTGGTGATGTCCTGGCACACCAgtgagtcccg ... tgactcacagGGTGGGTGTGACGTCGGAGCCGGACCACTCGACCATGGAGCTGACGCCGCA
EST: ATTCCGGGCCTGGCCATGAGCAGGGCGCTTGGTGATGTCCTGGCACACCA GGTGGGTGTGACGTCGGAGCCGGACCACTCGACCATGGAGCTGACGCCGCAEST: gi|161800089|gb|FC082724.1|FC082724
genomic: ATTCCGGGCCTGGCCATGAGCAGGGCGCTTGGTGATGTCCTGGCACACCAgtgagtcccg ... tgactcacagGGTGGGTGTGACGTCGGAGCCGGACCACTCGACCATGGAGCTGACGCCGCA
EST: ATTCCGGGCCTGGCCATGAGCAGGGCGCTTGGTGATGTCCTGGCACACCA GGTGGGTGTGACGTCGGAGCCGGACCACTCGACCATGGAGCTGACGCCGCAEST: gi|161795083|gb|FC078227.1|FC078227
genomic: ATTCCGGGCCTGGCCATGAGCAGGGCGCTTGGTGATGTCCTGGCACACCAgtgagtcccg ... tgactcacagGGTGGGTGTGACGTCGGAGCCGGACCACTCGACCATGGAGCTGACGCCGCA
EST: ATTCCGGGCCTGGCCATGAGCAGGGCGCTTGGTGATGTCCTGGCACACCA GGTGGGTGTGACGTCGGAGCCGGACCACTCGACCATGGAGCTGACGCCGCAEST: gi|23362365|gb|BU650185.1|BU650185
genomic: ATTCCGGGCCTGGCCATGAGCAGGGCGCTTGGTGATGTCCTGGCACACCAgtgagtcccg ... tgactcacagGGTGGGTGTGACGTCGGAGCCGGACCACTCGACCATGGAGCTGACGCCGCA
EST: ATTCCGGGCCTGGCCATGAGCAGGGCGCTTGGTGATGTCCTGGCACACCA GGTGGGTGTGACGTCGGAGCCGGACCACTCGACCATGGAGCTGACGCCGCA
genomic: ATTCCGGGCCTGGCCATGAGCAGGGCGCTTGGTGATGTCCTGGCACACCAgtgagtcccg ... tgactcacagGGTGGGTGTGACGTCGGAGCCGGACCACTCGACCATGGAGCTGACGCCGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATGGGCCAGCCCATGGGCCCCTACCGCGTGTGGCTGCAGTACGCGTGGATTCCGGGCCTGGCCATGAGCAGGGCGCTTGGTGATGTCCTGGCACACCAgtgagtcccggggcaagtggtcaatgctcgatacctgttctgtgcgtcaccgctttcctgccatgcatggttaggaggatgtaaaagttgcccttgcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggatgt