Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGACGACTCGTGCTCGTCGCCTGAGCTATATTTCGAACGACGCGAATGGGGCGGCGgtaagctcttgtcgaccgtctgcagcgcgctacgtcgatactaagcccgctttggcttgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP09786
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14239380|gb|BG858196.1|BG858196
EST:     CTCGTGCTCGTCGCCTGAGCTATATTTCGAACGACGCGAATGGGGCGGCG                         GTGAACGCGCCACCCGGCTCTGCTGCGCCTGCGGCTGCAAACCCGGGTGGC
genomic: CTCGTGCTCGTCGCCTGAGCTATATTTCGAACGACGCGAATGGGGCGGCGgtaagctctt ... tggcttgcagGTGAACGCGCCACCCGGCTCTGCTGCGCCTGCGGCTGCAAACCCGGGTGGC
EST: gi|16073072|gb|BI875068.1|BI875068
EST:     CTCGTGCTCGTCGCCTGAGCTATATTTCGAACGACGCGAATGGGGCGGCG                         GTGAACGCGCCACCCGGCTCTGCTGCGCCTGCGGCTGCAAACCCGGGTGGC
genomic: CTCGTGCTCGTCGCCTGAGCTATATTTCGAACGACGCGAATGGGGCGGCGgtaagctctt ... tggcttgcagGTGAACGCGCCACCCGGCTCTGCTGCGCCTGCGGCTGCAAACCCGGGTGGC
EST: gi|14237582|gb|BG856398.1|BG856398
EST:     CTCGTGCTCGTCGCCTGAGCTATATTTCGAACGACGCGAATGGGGCGGCG                         GTGAACGCGCCACCCGGCTCTGCTGCGCCTGCGGCTGCAAACCCGGGTGGC
genomic: CTCGTGCTCGTCGCCTGAGCTATATTTCGAACGACGCGAATGGGGCGGCGgtaagctctt ... tggcttgcagGTGAACGCGCCACCCGGCTCTGCTGCGCCTGCGGCTGCAAACCCGGGTGGC
EST: gi|14232081|gb|BG850897.1|BG850897
EST:     CTCGTGCTCGTCGCCTGAGCTATATTTCGAACGACGCGAATGGGGCGGCG                         GTGAACGCGCCACCCGGCTCTGCTGCGCCTGCGGCTGCAAACCCGGGTGGC
genomic: CTCGTGCTCGTCGCCTGAGCTATATTTCGAACGACGCGAATGGGGCGGCGgtaagctctt ... tggcttgcagGTGAACGCGCCACCCGGCTCTGCTGCGCCTGCGGCTGCAAACCCGGGTGGC
EST: gi|8513690|gb|BE121585.1|BE121585
EST:     CTCGTGCTCGTCGCCTGAGCTATATTTCGAACGACGCGAATGGGGCGGCG                         GTGAACGCGCCACCCGGCTCTGCTGCGCCTGCGGCTGCAAACCCGGGTGGC
genomic: CTCGTGCTCGTCGCCTGAGCTATATTTCGAACGACGCGAATGGGGCGGCGgtaagctctt ... tggcttgcagGTGAACGCGCCACCCGGCTCTGCTGCGCCTGCGGCTGCAAACCCGGGTGGC
EST: gi|15701797|gb|BI726102.1|BI726102
EST:     CTCGTGCTCGTCGCCTGAGCTATATTTCGAACGACGCGAATGGGGCGGCG                         GTGAACGCGCCACCCGGCTCTGCTGCGCCTGCGGCTGCAAACCCGGGTGGC
genomic: CTCGTGCTCGTCGCCTGAGCTATATTTCGAACGACGCGAATGGGGCGGCGgtaagctctt ... tggcttgcagGTGAACGCGCCACCCGGCTCTGCTGCGCCTGCGGCTGCAAACCCGGGTGGC
EST: gi|8286628|gb|BE024187.1|BE024187
EST:     CTCGTGCTCGTCGCCTGAGCTATATTTCGAACGACGCGAATGGGGCGGCG                         GTGAACGCGCCACCCGGCTCTGCTGCGCCTGCGGCTGCAAACCCGGGTGGC
genomic: CTCGTGCTCGTCGCCTGAGCTATATTTCGAACGACGCGAATGGGGCGGCGgtaagctctt ... tggcttgcagGTGAACGCGCCACCCGGCTCTGCTGCGCCTGCGGCTGCAAACCCGGGTGGC
EST: gi|6552006|gb|AV397790.1|AV397790
EST:     CTCGTGCTCGTCGCCTGAGCTATATTTCGAACGACGCGAATGGGGCGGCG                         GTGAACGCGCCACCCGGCTCTGCTGCGCCTGCGGCTGCAAACCCGGGTGGC
genomic: CTCGTGCTCGTCGCCTGAGCTATATTTCGAACGACGCGAATGGGGCGGCGgtaagctctt ... tggcttgcagGTGAACGCGCCACCCGGCTCTGCTGCGCCTGCGGCTGCAAACCCGGGTGGC
EST: gi|23365396|gb|BU653216.1|BU653216
EST:     CTCGTGCTCGTCGCCTGAGCTATATTTCGAACGACGCGAATGGGGCGGCG                         GTGAACGCGCCACCCGGCTCTGCTGCGCCTGCGGCTGCAAACCCGGGTGGC
genomic: CTCGTGCTCGTCGCCTGAGCTATATTTCGAACGACGCGAATGGGGCGGCGgtaagctctt ... tggcttgcagGTGAACGCGCCACCCGGCTCTGCTGCGCCTGCGGCTGCAAACCCGGGTGGC
EST: gi|49470919|gb|BP098780.1|BP098780
EST:     CTCGTGCTCGTCGCCTGAGCTATATTTCGAACGACGCGAATGGGGCGGCG                         GTGAACGCGCCACCCGGCTCTGCTGCGCCTGCGGCTGCAAACCCGGGTGGC
genomic: CTCGTGCTCGTCGCCTGAGCTATATTTCGAACGACGCGAATGGGGCGGCGgtaagctctt ... tggcttgcagGTGAACGCGCCACCCGGCTCTGCTGCGCCTGCGGCTGCAAACCCGGGTGGC
EST: gi|15695046|gb|BI719223.1|BI719223
EST:     CTCGTGCTCGTCGCCTGAGCTATATTTCGAACGACGCGAATGGGGCGGCG                         GTGAACGCGCCACCCGGCTCTGCTGCGCCTGCGGCTGCAAACCCGGGTGGC
genomic: CTCGTGCTCGTCGCCTGAGCTATATTTCGAACGACGCGAATGGGGCGGCGgtaagctctt ... tggcttgcagGTGAACGCGCCACCCGGCTCTGCTGCGCCTGCGGCTGCAAACCCGGGTGGC
EST: gi|8514321|gb|BE122216.1|BE122216
EST:     CTCGTGCTCGTCGCCTGAGCTATATTTCGAACGACGCGAATGGGGCGGCG                         GTGAACGCGCCACCCGGCTCTGCTGCGCCTGCGGCTGCAAACCCGGGTGGC
genomic: CTCGTGCTCGTCGCCTGAGCTATATTTCGAACGACGCGAATGGGGCGGCGgtaagctctt ... tggcttgcagGTGAACGCGCCACCCGGCTCTGCTGCGCCTGCGGCTGCAAACCCGGGTGGC