1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGCGCTGTCTCAGGGCTTCTGCGAGGTGGACCGGTCCTTGGGCAATAGCAGGATAGACTGCGAGTTCAGCGGCAGCACGGCCGTGGTCAGCTACCTGAAGgtgcgcgcgggcatgtgatggggtcagggctgtaggtaaagcagttttgaagggtttttgagggcgtatagctaccgggtgtgcggctggggttgcgttcagcggtcactgaccacgactggcgctgacctgatcatattgtcccaacctacag
species | Chlamydomonas reinhardtii |
transcript | EDP09786 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGATAGACTGCGAGTTCAGCGGCAGCACGGCCGTGGTCAGCTACCTGAAG GGCAAGACCCTGACGACAGCGTGGGTGGGTGACTCTCGTGGCGTGATGGGCEST: gi|23366894|gb|BU654713.1|BU654713
genomic: GGATAGACTGCGAGTTCAGCGGCAGCACGGCCGTGGTCAGCTACCTGAAGgtgcgcgcgg ... caacctacagGGCAAGACCCTGACGACAGCGTGGGTGGGTGACTCTCGTGGCGTGATGGGC
EST: GGATAGACTGCGAGTTCAGCGGCAGCACGGCCGTGGTCAGCTACCTGAAG GGCAAGACCCTGACGACAGCGTGGGTGGGTGACTCTCGTGGCGTGATGGGCEST: gi|22071053|gb|BQ820391.1|BQ820391
genomic: GGATAGACTGCGAGTTCAGCGGCAGCACGGCCGTGGTCAGCTACCTGAAGgtgcgcgcgg ... caacctacagGGCAAGACCCTGACGACAGCGTGGGTGGGTGACTCTCGTGGCGTGATGGGC
EST: GGATAGACTGCGAGTTCAGCGGCAGCACGGCCGTGGTCAGCTACCTGAAG GGCAAGACCCTGACGACAGCGTGGGTGGGTGACTCTCGTGGCGTGATGGGCEST: gi|16072868|gb|BI874864.1|BI874864
genomic: GGATAGACTGCGAGTTCAGCGGCAGCACGGCCGTGGTCAGCTACCTGAAGgtgcgcgcgg ... caacctacagGGCAAGACCCTGACGACAGCGTGGGTGGGTGACTCTCGTGGCGTGATGGGC
EST: GCGAGTTCAGCGGCAGCACGGCCGTGGTCAGCTACCTGAAG GGCAAGACCCTGACGACAGCGTGGGTGGGTGACTCTCGTGGCGTGATGGGCEST: gi|161800089|gb|FC082724.1|FC082724
genomic: GCGAGTTCAGCGGCAGCACGGCCGTGGTCAGCTACCTGAAGgtgcgcgcgg ... caacctacagGGCAAGACCCTGACGACAGCGTGGGTGGGTGACTCTCGTGGCGTGATGGGC
EST: GGATAGACTGCGAGTTCAGCGGCAGCACGGCCGTGGTCAGCTACCTGAAG GGCAAGACCCTGACGACAGCGTGGGTGGGTGACTCTCGTGGCGTGATGGGCEST: gi|161795083|gb|FC078227.1|FC078227
genomic: GGATAGACTGCGAGTTCAGCGGCAGCACGGCCGTGGTCAGCTACCTGAAGgtgcgcgcgg ... caacctacagGGCAAGACCCTGACGACAGCGTGGGTGGGTGACTCTCGTGGCGTGATGGGC
EST: GGATAGACTGCGAGTTCAGCGGCAGCACGGCCGTGGTCAGCTACCTGAAG GGCAAGACCCTGACGACAGCGTGGGTGGGTGACTCTCGTGGCGTGATGGGCEST: gi|23362365|gb|BU650185.1|BU650185
genomic: GGATAGACTGCGAGTTCAGCGGCAGCACGGCCGTGGTCAGCTACCTGAAGgtgcgcgcgg ... caacctacagGGCAAGACCCTGACGACAGCGTGGGTGGGTGACTCTCGTGGCGTGATGGGC
EST: GGATAGACTGCGAGTTCAGCGGCAGCACGGCCGTGGTCAGCTACCTGAAG GGCAAGACCCTGACGACAGCGTGGGTGGGTGACTCTCGTGGCGTGATGGGC
genomic: GGATAGACTGCGAGTTCAGCGGCAGCACGGCCGTGGTCAGCTACCTGAAGgtgcgcgcgg ... caacctacagGGCAAGACCCTGACGACAGCGTGGGTGGGTGACTCTCGTGGCGTGATGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGCTGTCTCAGGGCTTCTGCGAGGTGGACCGGTCCTTGGGCAATAGCAGGATAGACTGCGAGTTCAGCGGCAGCACGGCCGTGGTCAGCTACCTGAAGgtgcgcgcgggcatgtgatggggtcagggctgtaggtaaagcagttttgaagggtttttgagggcgtatagctaccgggtgtgcggctggggttgcgttcagcggtcactgaccacgactggcgctgacctgatcatattgtcccaacctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG