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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgttaagcagcggagtctgttgcggcccccacagctaagacgcatgttgatggcgcccgcagGCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGACGACTCGTGCTCGTCGCCTGAGCTATATTTCGAACGACGCGAATGGGGC

Basic information

species Chlamydomonas reinhardtii
transcript EDP09786
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14239380|gb|BG858196.1|BG858196
EST:     TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATG                         GCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
genomic: TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATGgtgcgttaag ... gcgcccgcagGCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
EST: gi|16073072|gb|BI875068.1|BI875068
EST:     GACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCCGGCTGCCAAGAATG                         GCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
genomic: GACCAGCAGAAGCAGCAACAACAGCAGGGCGGAG-CGGCTGCCAAGAATGgtgcgttaag ... gcgcccgcagGCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
EST: gi|14237582|gb|BG856398.1|BG856398
EST:     TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATG                         GCTCGGCTGCCGACAAGGCCGCGNACCGACGCTGAGACACAAAAGGCAAAG
genomic: TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATGgtgcgttaag ... gcgcccgcagGCTCGGCTGCCGACAAGGCCGCG-ACCGACGCTGAGACACAAAAGGCAAAG
EST: gi|14232081|gb|BG850897.1|BG850897
EST:     TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATG                         GCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
genomic: TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATGgtgcgttaag ... gcgcccgcagGCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
EST: gi|8513690|gb|BE121585.1|BE121585
EST:     TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATG                         GCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
genomic: TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATGgtgcgttaag ... gcgcccgcagGCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
EST: gi|15701797|gb|BI726102.1|BI726102
EST:     TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATG                         GCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
genomic: TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATGgtgcgttaag ... gcgcccgcagGCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
EST: gi|8286628|gb|BE024187.1|BE024187
EST:     TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATG                         GCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
genomic: TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATGgtgcgttaag ... gcgcccgcagGCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
EST: gi|6552006|gb|AV397790.1|AV397790
EST:     TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATG                         GCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
genomic: TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATGgtgcgttaag ... gcgcccgcagGCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
EST: gi|23365396|gb|BU653216.1|BU653216
EST:     TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATG                         GCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
genomic: TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATGgtgcgttaag ... gcgcccgcagGCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
EST: gi|49470919|gb|BP098780.1|BP098780
EST:     TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATG                         GCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
genomic: TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATGgtgcgttaag ... gcgcccgcagGCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
EST: gi|15695046|gb|BI719223.1|BI719223
EST:     TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATG                         GCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
genomic: TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATGgtgcgttaag ... gcgcccgcagGCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
EST: gi|8514321|gb|BE122216.1|BE122216
EST:     TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATG                         GCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
genomic: TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATGgtgcgttaag ... gcgcccgcagGCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagcggagtctgttgcggcccccacagctaagacgcatgttgatggcgcccgcagGCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGACGACTCGTGCTCGTCGCCTGAGCTATATTTCGAACGACGCGAATGGGGC
                                     tgttgat  putative branch site (score: 4)