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gtaagctaatctctagtacaaggactggcggaggttatccttgtgctctttataatgaatcccgcatgaagcatgcgtaggtgggcagcggccaaccatgttaacatcacggcccttcccgcgctggtacagGCTGGTGGACGAGATGGGCCAGCCCATGGGCCCCTACCGCGTGTGGCTGCAGTACGCGTGGATTCCGGGCCTGGCCATGAGCAGGGCGCTTGGTGATGTC
species | Chlamydomonas reinhardtii |
transcript | EDP09786 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCTCCGGAGGAGAAGGCGCGGATTCTCAAAGCGAACGGCCGTGTGGAGCG GCTGGTGGACGAGATGGGCCAGCCCATGGGCCCCTACCGCGTGTGGCTGCAEST: gi|23366894|gb|BU654713.1|BU654713
genomic: GCGCCGGAGGAGAAGGCGCGGATTCTCAAAGCGAACGGCCGTGTGGAGCGgtaagctaat ... gctggtacagGCTGGTGGACGAGATGGGCCAGCCCATGGGCCCCTACCGCGTGTGGCTGCA
EST: GCGCCGGAGGAGAAGGCGCGGATTCTCAAAGCGAACGGCCGTGTGGAGCG GCTGGTGGACGAGATGGGCCAGCCCATGGGCCCCTACCGCGTGTGGCTGCAEST: gi|14234788|gb|BG853604.1|BG853604
genomic: GCGCCGGAGGAGAAGGCGCGGATTCTCAAAGCGAACGGCCGTGTGGAGCGgtaagctaat ... gctggtacagGCTGGTGGACGAGATGGGCCAGCCCATGGGCCCCTACCGCGTGTGGCTGCA
EST: GCGCC-GAGGAGAAGGCGCGGATTCTCAAAGCGAACGGCCGTGT-GAGCG GCTGGTGGACGAGATGGGCCAGCCCATGGGCCCCTACCGCGTGTGGCTGCAEST: gi|16072868|gb|BI874864.1|BI874864
genomic: GCGCCGGAGGAGAAGGCGCGGATTCTCAAAGCGAACGGCCGTGTGGAGCGgtaagctaat ... gctggtacagGCTGGTGGACGAGATGGGCCAGCCCATGGGCCCCTACCGCGTGTGGCTGCA
EST: GCGCCGGAGGAGAAGGCGCGGATTCTCAAAGCGAACGGCCGTGTGGAGCG GCTGGTGGACGAGATGGGCCAGCCCATGGGCCCCTACCGCGTGTGGCTGCAEST: gi|161800089|gb|FC082724.1|FC082724
genomic: GCGCCGGAGGAGAAGGCGCGGATTCTCAAAGCGAACGGCCGTGTGGAGCGgtaagctaat ... gctggtacagGCTGGTGGACGAGATGGGCCAGCCCATGGGCCCCTACCGCGTGTGGCTGCA
EST: GCTCCGGAGGAGAAGGCGCGGATTCTCAAAGCGAACGGCCGTGTGGAGCG GCTGGTGGACGAGATGGGCCAGCCCATGGGCCCCTACCGCGTGTGGCTGCAEST: gi|161795083|gb|FC078227.1|FC078227
genomic: GCGCCGGAGGAGAAGGCGCGGATTCTCAAAGCGAACGGCCGTGTGGAGCGgtaagctaat ... gctggtacagGCTGGTGGACGAGATGGGCCAGCCCATGGGCCCCTACCGCGTGTGGCTGCA
EST: GCTCCGGAGGAGAAGGCGCGGATTCTCAAAGCGAACGGCCGTGTGGAGCG GCTGGTGGACGAGATGGGCCAGCCCATGGGCCCCTACCGCGTGTGGCTGCAEST: gi|23362365|gb|BU650185.1|BU650185
genomic: GCGCCGGAGGAGAAGGCGCGGATTCTCAAAGCGAACGGCCGTGTGGAGCGgtaagctaat ... gctggtacagGCTGGTGGACGAGATGGGCCAGCCCATGGGCCCCTACCGCGTGTGGCTGCA
EST: GCGCCGGAGGAGAAGGCGCGGATTCTCAAAGCGAACGGCCGTGTGGAGCG GCTGGTGGACGAGATGGGCCAGCCCATGGGCCCCTACCGCGTGTGGCTGCA
genomic: GCGCCGGAGGAGAAGGCGCGGATTCTCAAAGCGAACGGCCGTGTGGAGCGgtaagctaat ... gctggtacagGCTGGTGGACGAGATGGGCCAGCCCATGGGCCCCTACCGCGTGTGGCTGCA
taggtgggcagcggccaaccatgttaacatcacggcccttcccgcgctggtacagGCTGGTGGACGAGATGGGCCAGCCCATGGGCCCCTACCGCGTGTGGCTGCAGTACGCGTGGATTCCGGGCCTGGCCATGAGCAGGGCGCTTGGTGATGTC
tgttaac putative branch site (score: 2)
atgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctaatctctagtacaaggactggcggaggttatccttgtgctctttataatgaatcccgcatgaagcatgcgtaggtgggcagcggccaaccatgttaacatcacggcccttcccgcgctggtacagGCTGGTGGACGAGATGGGCCAGCCCATGGGCCCCTACCGCGTGTGGCTGCAGTACGCGTGGATTCCGGGCCTGGCCATGAGCAGGGCGCTTGGTGATGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG