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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaggcactggtattgaggtattgttcgccaagcaacgcagcatgccctcgatgtttgcagGGCACCTGGTGTCTGGCTACGTCAAGCAGCACCTGCCGATAATACTCGTTAACCACCTAACGTTGGAAAAGGACGTGAAGAAGGCGCTGTCTCAGGGCTT

Basic information

species Chlamydomonas reinhardtii
transcript EDP09786
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161795286|gb|FC081407.1|FC081407
EST:     CACCGAGGACCAGTCTCTGTTCGGTGCTATGGATGGTCACGGGCCACACG                         GGCACCTGGTGTCTGGCTACGTCAAGCAGCACCTGCCGATAATACTCGTTA
genomic: CACCGAGGACCAGTCTCTGTTCGGTGCTATGGATGGTCACGGGCCACACGgtaaggaggc ... atgtttgcagGGCACCTGGTGTCTGGCTACGTCAAGCAGCACCTGCCGATAATACTCGTTA
EST: gi|23366894|gb|BU654713.1|BU654713
EST:     CACCGAGGACCAGTCTCTGTTCGGTGCTATGGATGGTCACGGGCCACACG                         GGCACCTGGTGTCTGGCTACGTCAAGCAGCACCTGCCGATAATACTCGTTA
genomic: CACCGAGGACCAGTCTCTGTTCGGTGCTATGGATGGTCACGGGCCACACGgtaaggaggc ... atgtttgcagGGCACCTGGTGTCTGGCTACGTCAAGCAGCACCTGCCGATAATACTCGTTA
EST: gi|14239380|gb|BG858196.1|BG858196
EST:     CACCGAGGACCAGTCTCTGTTCGGTGCTATGGATGGTCACGGGCCACACG                         GGCACCTGGTGTCTGGCTACGTCAAGCAGCACCTGCCGATA
genomic: CACCGAGGACCAGTCTCTGTTCGGTGCTATGGATGGTCACGGGCCACACGgtaaggaggc ... atgtttgcagGGCACCTGGTGTCTGGCTACGTCAAGCAGCACCTGCCGATA
EST: gi|22071053|gb|BQ820391.1|BQ820391
EST:     CACCGAGGACCAGTCTCTGTTCGGTGCTATGGATGGTCACGGGCCACACG                         GGCACCTGGTGTCTGGCTACGTCAAGCAGCACCTGCCGATAATACTCGTTA
genomic: CACCGAGGACCAGTCTCTGTTCGGTGCTATGGATGGTCACGGGCCACACGgtaaggaggc ... atgtttgcagGGCACCTGGTGTCTGGCTACGTCAAGCAGCACCTGCCGATAATACTCGTTA
EST: gi|161800089|gb|FC082724.1|FC082724
EST:     CACCGAGGACCAGTCTCTGTTCGGTGCTATGGATGGTCACGGGCCACACG                         GGCACCTGGTGTCTGGCTACGTCAAGCAGCACCTGCCGATAATACTCGTTA
genomic: CACCGAGGACCAGTCTCTGTTCGGTGCTATGGATGGTCACGGGCCACACGgtaaggaggc ... atgtttgcagGGCACCTGGTGTCTGGCTACGTCAAGCAGCACCTGCCGATAATACTCGTTA
EST: gi|14237582|gb|BG856398.1|BG856398
EST:     CACCGAGGACCAGTCTCTGTTCGGTGCTATGGATGGTCACGGGCCACACG                         GGCACCTGGTGTCTGGCTACGTCAAGCAGCACCTGCCGATAATACTCGNTA
genomic: CACCGAGGACCAGTCTCTGTTCGGTGCTATGGATGGTCACGGGCCACACGgtaaggaggc ... atgtttgcagGGCACCTGGTGTCTGGCTACGTCAAGCAGCACCTGCCGATAATACTCGTTA
EST: gi|14232081|gb|BG850897.1|BG850897
EST:     CACCGAGGACCAGTCTCTGTTCGGTGCTATGGATGGTCACGGGCCACACG                         GGCACCTGGTGTCTGGCTACGTCAAGCAGCACCTGCCGATAATACTCG
genomic: CACCGAGGACCAGTCTCTGTTCGGTGCTATGGATGGTCACGGGCCACACGgtaaggaggc ... atgtttgcagGGCACCTGGTGTCTGGCTACGTCAAGCAGCACCTGCCGATAATACTCG
EST: gi|23362365|gb|BU650185.1|BU650185
EST:     CACCGAGGACCAGTCTCTGTTCGGTGCTATGGATGGTCACGGGCCACACG                         GGCACCTGGTGTCTGGCTACGTCAAGCAGCACCTGCCGATAATACTCGTTA
genomic: CACCGAGGACCAGTCTCTGTTCGGTGCTATGGATGGTCACGGGCCACACGgtaaggaggc ... atgtttgcagGGCACCTGGTGTCTGGCTACGTCAAGCAGCACCTGCCGATAATACTCGTTA
EST: gi|15695046|gb|BI719223.1|BI719223
EST:     CACCGAGGACCAGTCTCTGTTCGGTGCTATGGATGGTCACGGGCCACACG                         GGCACCTGGTGTCTGGCTACGTCAAGCAGCACCTGCCGATAATACTCGTTA
genomic: CACCGAGGACCAGTCTCTGTTCGGTGCTATGGATGGTCACGGGCCACACGgtaaggaggc ... atgtttgcagGGCACCTGGTGTCTGGCTACGTCAAGCAGCACCTGCCGATAATACTCGTTA
EST: gi|8514321|gb|BE122216.1|BE122216
EST:     CACCGAGGACCAGTCTCTGTTCGGTGCTATGGATGGTCACGGGCCACACG                         GGCACCTGGTGTCTGGC
genomic: CACCGAGGACCAGTCTCTGTTCGGTGCTATGGATGGTCACGGGCCACACGgtaaggaggc ... atgtttgcagGGCACCTGGTGTCTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actggtattgaggtattgttcgccaagcaacgcagcatgccctcgatgtttgcagGGCACCTGGTGTCTGGCTACGTCAAGCAGCACCTGCCGATAATACTCGTTAACCACCTAACGTTGGAAAAGGACGTGAAGAAGGCGCTGTCTCAGGGCTT
             tattgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaggaggcactggtattgaggtattgttcgccaagcaacgcagcatgccctcgatgtttgcagGGCACCTGGTGTCTGGCTACGTCAAGCAGCACCTGCCGATAATACTCGTTAACCACCTAACGTTGGAAAAGGACGTGAAGAAGGCGCTGTCTCAGGGCTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG