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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAACGCGCCACCCGGCTCTGCTGCGCCTGCGGCTGCAAACCCGGGTGGCAAATCTGGCAACACGAGAGCCAGGCGTCTGTCCTACGTGACAAACGATgtaagaacgcggagtatgttttttccgcatcgtcccctttctgactcacatgtcactctctgcttgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP09786
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14239380|gb|BG858196.1|BG858196
EST:     GCAAATCTGGCAACACGAGAGCCAGGCGTCTGTCCTACGTGACAAACGAT                         CCCAACGCCTCGCCGGGCAACCTGAAGCTCAATGGCGAAGGGGAGGGTGGC
genomic: GCAAATCTGGCAACACGAGAGCCAGGCGTCTGTCCTACGTGACAAACGATgtaagaacgc ... ctgcttgcagCCCAACGCCTCGCCGGGCAACCTGAAGCTCAATGGCGAAGGGGAGGGTGGC
EST: gi|16073072|gb|BI875068.1|BI875068
EST:     GCAAATCTGGCAACACGAGAGCCAGGCGTCTGTCCTACGTGACAAACGAT                         CCCAACGCCTCGCCGGGCAACCTGAAGCTCAATGGCGAAGGGGAGGGTGGC
genomic: GCAAATCTGGCAACACGAGAGCCAGGCGTCTGTCCTACGTGACAAACGATgtaagaacgc ... ctgcttgcagCCCAACGCCTCGCCGGGCAACCTGAAGCTCAATGGCGAAGGGGAGGGTGGC
EST: gi|14237582|gb|BG856398.1|BG856398
EST:     GCAAATCTGGCAACACGAGAGCCAGGCGTCTGTCCTACGTGACAAACGAT                         CCCAACGCCTCGCCGGGCAACCTGAAGCTCAATGGCGAAGGGGAGGGTGNG
genomic: GCAAATCTGGCAACACGAGAGCCAGGCGTCTGTCCTACGTGACAAACGATgtaagaacgc ... ctgcttgcagCCCAACGCCTCGCCGGGCAACCTGAAGCTCAATGGCGAAGGGGAGGGTG-G
EST: gi|14232081|gb|BG850897.1|BG850897
EST:     GCAAATCTGGCAACACGAGAGCCAGGCGTCTGTCCTACGTGACAAACGAT                         CCCAACGCCTCGCCGGGCAACCTGAAGCTCTAATGGCGAAGGGGAGGGTGG
genomic: GCAAATCTGGCAACACGAGAGCCAGGCGTCTGTCCTACGTGACAAACGATgtaagaacgc ... ctgcttgcagCCCAACGCCTCGCCGGGCAACCTGAAGCTC-AATGGCGAAGGGGAGGGTGG
EST: gi|8513690|gb|BE121585.1|BE121585
EST:     GCAAATCTGGCAACACGAGAGCCAGGCGTCTGTCCTACGTGACAAACGAT                         CCCAACGCCTCGCCGGGCAACCTGAAGCTCAATGGCGAATGGGAGGGTGGC
genomic: GCAAATCTGGCAACACGAGAGCCAGGCGTCTGTCCTACGTGACAAACGATgtaagaacgc ... ctgcttgcagCCCAACGCCTCGCCGGGCAACCTGAAGCTCAATGGCGAAGGGGAGGGTGGC
EST: gi|15701797|gb|BI726102.1|BI726102
EST:     GCAAATCTGGCAACACGAGAGCCAGGCGTCTGTCCTACGTGACAAACGAT                         CCCAACGCCTCGCCGGGCAACCTGAAGCTCAATGGCGAAGGGGAGGGTGGC
genomic: GCAAATCTGGCAACACGAGAGCCAGGCGTCTGTCCTACGTGACAAACGATgtaagaacgc ... ctgcttgcagCCCAACGCCTCGCCGGGCAACCTGAAGCTCAATGGCGAAGGGGAGGGTGGC
EST: gi|8286628|gb|BE024187.1|BE024187
EST:     GCAAATCTGGCAACACGAGAGCCAGGCGTCTGTCCTACGTGACAAACGAT                         CCCAACGCCTCGCCGGGCAACCTGAAGCTCAATGGCGAAGGGGAGGGTGGC
genomic: GCAAATCTGGCAACACGAGAGCCAGGCGTCTGTCCTACGTGACAAACGATgtaagaacgc ... ctgcttgcagCCCAACGCCTCGCCGGGCAACCTGAAGCTCAATGGCGAAGGGGAGGGTGGC
EST: gi|6552006|gb|AV397790.1|AV397790
EST:     GCAAATCTGGCAACACGAGAGCCAGGCGTCTGTCCTACGTGACAAACGAT                         CCCAACGCCTCGCCGGGCAACCTGAAGCTCAATGGCGAAGGGGAGGGTGGC
genomic: GCAAATCTGGCAACACGAGAGCCAGGCGTCTGTCCTACGTGACAAACGATgtaagaacgc ... ctgcttgcagCCCAACGCCTCGCCGGGCAACCTGAAGCTCAATGGCGAAGGGGAGGGTGGC
EST: gi|23365396|gb|BU653216.1|BU653216
EST:     GCAAATCTGGCAACACGAGAGCCAGGCGTCTGTCCTACGTGACAAACGAT                         CCCAACGCCTCGCCGGGCAACCTGAAGCTCAATGGCGAAGGGGAGGGTGGC
genomic: GCAAATCTGGCAACACGAGAGCCAGGCGTCTGTCCTACGTGACAAACGATgtaagaacgc ... ctgcttgcagCCCAACGCCTCGCCGGGCAACCTGAAGCTCAATGGCGAAGGGGAGGGTGGC
EST: gi|49470919|gb|BP098780.1|BP098780
EST:     GCAAATCTGGCAACACGAGAGCCAGGCGTCTGTCCTACGTGACAAACGAT                         CCCAACGCCTCGCCGGGCAACCTGAAGCTCAATGGCGAAGGGGAGGGTGGC
genomic: GCAAATCTGGCAACACGAGAGCCAGGCGTCTGTCCTACGTGACAAACGATgtaagaacgc ... ctgcttgcagCCCAACGCCTCGCCGGGCAACCTGAAGCTCAATGGCGAAGGGGAGGGTGGC
EST: gi|15695046|gb|BI719223.1|BI719223
EST:     GCAAATCTGGCAACACGAGAGCCAGGCGTCTGTCCTACGTGACAAACGAT                         CCCAACGCCTCGCCGGGCAACCTGAAGCTCAATGGCGAAGGGGAGGGTGGC
genomic: GCAAATCTGGCAACACGAGAGCCAGGCGTCTGTCCTACGTGACAAACGATgtaagaacgc ... ctgcttgcagCCCAACGCCTCGCCGGGCAACCTGAAGCTCAATGGCGAAGGGGAGGGTGGC
EST: gi|8514321|gb|BE122216.1|BE122216
EST:     GCAAATCTGGCAACACGAGAGCCAGGCGTCTGTCCTACGTGACAAACGAT                         CCCAACGCCTCGCCGGGCAACCTGAAGCTCAATGGCGAAGGGGAGGGTGGC
genomic: GCAAATCTGGCAACACGAGAGCCAGGCGTCTGTCCTACGTGACAAACGATgtaagaacgc ... ctgcttgcagCCCAACGCCTCGCCGGGCAACCTGAAGCTCAATGGCGAAGGGGAGGGTGGC