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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtggcgtatgggcccggtgctgcgaccagcgatggagaggagtacggtactcattttgctgcctaagcaagagttgcgttctgtccatgtcattcacaccgctgacatcacggtgtgacaccattgactcccaacatccgctctgccctcctcgcacttcttctcggctttgcagCCGTACCACTTCGGCGCGGCGTCGGGGCTTGGGCTGTGCCTGCTGCAGATGTCGCGCTATGAGGAGGCGTTGGCGGCGTTTGAGGCGGCCCTGGTGATCC

Basic information

species Chlamydomonas reinhardtii
transcript EDP06247
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161810414|gb|FC098244.1|FC098244
EST:     GCCGCCACCAGGCCAGCATCGACGACTGCAACGCCGTGCTAGGCATGCAG                         CCGTACCACTTCGGCGCGGCGTCGGGGCTTGGGCTGTGCCTGCTGCAGATG
genomic: GCCGCCACCAGGCCAGCATCGACGACTGCAACGCCGTGCTGGGCATGCAGgtgtgtggcg ... ggctttgcagCCGTACCACTTCGGCGCGGCGTCGGGGCTTGGGCTGTGCCTGCTGCAGATG
EST: gi|9458402|gb|BE452222.1|BE452222
EST:     GCCGCCACCAGGCCAGCATCGACGACTGCAACGCCGTGCTGGGCATGCAG                         CCGTACCACTTCGGCGCGGCGTCGGGGCTTGGGCTGTGCCTGCTGCAGATG
genomic: GCCGCCACCAGGCCAGCATCGACGACTGCAACGCCGTGCTGGGCATGCAGgtgtgtggcg ... ggctttgcagCCGTACCACTTCGGCGCGGCGTCGGGGCTTGGGCTGTGCCTGCTGCAGATG
EST: gi|49466532|gb|BP094445.1|BP094445
EST:     GCCGCCACCAGGCCAGCATCGACGACTGCAACGCCGTGCTGGGCATGCAG                         CCGTACCACTTCGGCGCGGCGTCGGGGCTTGGGCTGTGCCTGCTGCAGATG
genomic: GCCGCCACCAGGCCAGCATCGACGACTGCAACGCCGTGCTGGGCATGCAGgtgtgtggcg ... ggctttgcagCCGTACCACTTCGGCGCGGCGTCGGGGCTTGGGCTGTGCCTGCTGCAGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccattgactcccaacatccgctctgccctcctcgcacttcttctcggctttgcagCCGTACCACTTCGGCGCGGCGTCGGGGCTTGGGCTGTGCCTGCTGCAGATGTCGCGCTATGAGGAGGCGTTGGCGGCGTTTGAGGCGGCCCTGGTGATCC
 cattgac  putative branch site (score: 3)
                         ccctcctcgcacttct  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgtgtggcgtatgggcccggtgctgcgaccagcgatggagaggagtacggtactcattttgctgcctaagcaagagttgcgttctgtccatgtcattcacaccgctgacatcacggtgtgacaccattgactcccaacatccgctctgccctcctcgcacttcttctcggctttgcagCCGTACCACTTCGGCGCGGCGTCGGGGCTTGGGCTGTGCCTGCTGCAGATGTCGCGCTATGAGGAGGCGTTGGCGGCGTTTGAGGCGGCCCTGGTGATCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG