1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GATGCAGGAGGGCTGCATGTACATGCGCTCGCCCGCCACCTACGACAAGGCGCTGGGCGTGTTCAGCCAGATGATCCAGCTGGCCCCGTCCTACGTGGAGgtgtgttaacgaggggggtatatgcctgagccaaaagagttaggttcccaattgtcaaagaatcgttgcccaacccgggaatgcaggggcaaggccgcgg...
species | Chlamydomonas reinhardtii |
transcript | EDP06247 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CGCTGGGCGTGTTCAGCCAGATGATCCAGCTGGCCCCGTCCTACGTGGAG GGCTACAACAAGCGGGCCACGGTCAACTACCTCATGGGCCGCCACCAGGCCEST: gi|9458402|gb|BE452222.1|BE452222
genomic: CGCTGGGCGTGTTCAGCCAGATGATCCAGCTGGCCCCGTCCTACGTGGAGgtgtgttaac ... catgccacagGGCTACAACAAGCGGGCCACGGTCAACTACCTCATGGGCCGCCACCAGGCC
EST: CGCTGGGCGTGTTCAGCCAGATGATCCAGCTGGCCCCGTCCTACGTGGAG GGCTACAACAAGCGGGCCACGGTCAACTACCTCATGGGCCGCCACCAGGCCEST: gi|49466532|gb|BP094445.1|BP094445
genomic: CGCTGGGCGTGTTCAGCCAGATGATCCAGCTGGCCCCGTCCTACGTGGAGgtgtgttaac ... catgccacagGGCTACAACAAGCGGGCCACGGTCAACTACCTCATGGGCCGCCACCAGGCC
EST: CGCTGGGCGTGTTCAGCCAGATGATCCAGCTGGCCCCGTCCTACGTGGAG GGCTACAACAAGCGGGCCACGGTCAACTACCTCATGGGCCGCCACCAGGCC
genomic: CGCTGGGCGTGTTCAGCCAGATGATCCAGCTGGCCCCGTCCTACGTGGAGgtgtgttaac ... catgccacagGGCTACAACAAGCGGGCCACGGTCAACTACCTCATGGGCCGCCACCAGGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGCAGGAGGGCTGCATGTACATGCGCTCGCCCGCCACCTACGACAAGGCGCTGGGCGTGTTCAGCCAGATGATCCAGCTGGCCCCGTCCTACGTGGAGgtgtgttaacgaggggggtatatgcctgagccaaaagagttaggttcccaattgtcaaagaatcgttgcccaacccgggaatgcaggggcaaggccgcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agccaaa