1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCAGCTCAAGGTCGCCGTGGCCGATGAGGACTATGCGCTTGCTGCAAAGCTTCGAGACGAGCAGAAGgtgggggtagtgctcgagggcggggtcagccgcaacggcaacggaggctccgtagcgggtgggctgtcatctgtcggcatgccggttcctacagccctcgtatgcacattttgcttcgaacgttaaccctggaccctctgccgcgctacctgcag
species | Chlamydomonas reinhardtii |
transcript | EDP06247 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGGCCGATGAGGACTATGCGCTTGCTGCAAAGCTTCGAGACGAGCAGAAG ACTCTATCCGACAGCCTGCCGCCCATACTCCAGTACGCGCTGGGGCAGGTGEST: gi|10773138|gb|AV623961.1|AV623961
genomic: TGGCCGATGAGGACTATGCGCTTGCTGCAAAGCTTCGAGACGAGCAGAAGgtgggggtag ... ctacctgcagACTCTATCCGACAGCCTGCCGCCCATACTCCAGTACGCGCTGGGGCAGGTG
EST: TGGCCGATGAGGACTATGCGCTTGCTGCAAAGCTTCGAGACGAGCAGAAG ACTCTATCCGACAGCCTGCCGCCCATACTCCAGTACGCGCTGGGGCAGGTGEST: gi|161810414|gb|FC098244.1|FC098244
genomic: TGGCCGATGAGGACTATGCGCTTGCTGCAAAGCTTCGAGACGAGCAGAAGgtgggggtag ... ctacctgcagACTCTATCCGACAGCCTGCCGCCCATACTCCAGTACGCGCTGGGGCAGGTG
EST: TGGCCGATGAGGACTATGCGCTTGCGGCAAAGCTTCGAGACGAGCAGAAG ACTCTATCCGACAGCCTGCCGCCCATACTCCAGTACGCGTTGGGGCAGGTGEST: gi|9458402|gb|BE452222.1|BE452222
genomic: TGGCCGATGAGGACTATGCGCTTGCTGCAAAGCTTCGAGACGAGCAGAAGgtgggggtag ... ctacctgcagACTCTATCCGACAGCCTGCCGCCCATACTCCAGTACGCGCTGGGGCAGGTG
EST: GCCGATGAGGACTATGCGCTTGCTGCAAAGCTTCGAGACGAGCAGAAG ACTCTATCCGACAGCCTGCCGCCCATACTCCAGTACGCGCTGGGGCAGGTGEST: gi|10775159|gb|AV625982.1|AV625982
genomic: GCCGATGAGGACTATGCGCTTGCTGCAAAGCTTCGAGACGAGCAGAAGgtgggggtag ... ctacctgcagACTCTATCCGACAGCCTGCCGCCCATACTCCAGTACGCGCTGGGGCAGGTG
EST: TGGCCGATGAGGACTATGCGCTTGCTGCAAAGCTTCGAGACGAGCAGAAG ACTCTATCCGACAGCCTGCCGCCCATACTCCAGTACGCGCTGGGGCAGGTGEST: gi|10773747|gb|AV624570.1|AV624570
genomic: TGGCCGATGAGGACTATGCGCTTGCTGCAAAGCTTCGAGACGAGCAGAAGgtgggggtag ... ctacctgcagACTCTATCCGACAGCCTGCCGCCCATACTCCAGTACGCGCTGGGGCAGGTG
EST: TGGCCGATGAGGACTATGCGCTTGCTGCAAAGCTTCGAGACGAGCAGAAG ACTCTATCCGACAGCCTGCCGCCCATACTCCAGTACGCGCTGGGGCAGGTG
genomic: TGGCCGATGAGGACTATGCGCTTGCTGCAAAGCTTCGAGACGAGCAGAAGgtgggggtag ... ctacctgcagACTCTATCCGACAGCCTGCCGCCCATACTCCAGTACGCGCTGGGGCAGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGCTCAAGGTCGCCGTGGCCGATGAGGACTATGCGCTTGCTGCAAAGCTTCGAGACGAGCAGAAGgtgggggtagtgctcgagggcggggtcagccgcaacggcaacggaggctccgtagcgggtgggctgtcatctgtcggcatgccggttcctacagccctcgtatgcacattttgcttcgaacgttaaccctggaccctctgccgcgctacctgcag
- - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG