Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCGCACAACCGCGTCGCTAGGTGCAGACGATGTTCAGACCGCGACTTCTTCCGCGCTTGACGCTGCGCAGACCTGGGAGCGCCTGAGCCTTGTAACGCGgtaagtctagaatgtgctcaaaaatagatgaacctgtgacagttggagagttgaccgtgttttggtcgcataccacggttccctcgcacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06247
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10768674|gb|AV619499.1|AV619499
EST:     TCCGCGCTTGACGCTGCGCAGACCTGGGAGCGCCTGAGCCTTGTAACGCG                         GCAGCTCAAGGTCGCCGTGGCCGATGAGGACTATGCGCTTGCTGCAAAGCT
genomic: TCCGCGCTTGACGCTGCGCAGACCTGGGAGCGCCTGAGCCTTGTAACGCGgtaagtctag ... cctcgcacagGCAGCTCAAGGTCGCCGTGGCCGATGAGGACTATGCGCTTGCTGCAAAGCT
EST: gi|10773138|gb|AV623961.1|AV623961
EST:     TCCGCGCTTGACGCTGCGCAGACCTGGGAGCGCCTGAGCCTTGTAACGCG                         GCAGCTCAAGGTCGCCGTGGCCGATGAGGACTATGCGCTTGCTGCAAAGCT
genomic: TCCGCGCTTGACGCTGCGCAGACCTGGGAGCGCCTGAGCCTTGTAACGCGgtaagtctag ... cctcgcacagGCAGCTCAAGGTCGCCGTGGCCGATGAGGACTATGCGCTTGCTGCAAAGCT
EST: gi|161810414|gb|FC098244.1|FC098244
EST:     TCCGCGCTTGACGCTGCGCAGACCTGGGAGCGCCTGAGCCTTGTAACGCG                         GCAGCTCAAGGTCGCCGTGGCCGATGAGGACTATGCGCTTGCGGCAAAGCT
genomic: TCCGCGCTTGACGCTGCGCAGACCTGGGAGCGCCTGAGCCTTGTAACGCGgtaagtctag ... cctcgcacagGCAGCTCAAGGTCGCCGTGGCCGATGAGGACTATGCGCTTGCTGCAAAGCT
EST: gi|10775159|gb|AV625982.1|AV625982
EST:     TCCGCGCTTGACGCTGCGCAGACCTGGGAGCGCCTGAGCCTTGTAACGCG                         GCAGCTCAAGGTCGCCGTGGCCGATGAGGACTATGCGCTTGCTGCAAAGCT
genomic: TCCGCGCTTGACGCTGCGCAGACCTGGGAGCGCCTGAGCCTTGTAACGCGgtaagtctag ... cctcgcacagGCAGCTCAAGGTCGCCGTGGCCGATGAGGACTATGCGCTTGCTGCAAAGCT
EST: gi|10773747|gb|AV624570.1|AV624570
EST:     TCCGCGCTTGACGCTGCGCAGACCTGGGAGCGCCTGAGCCTTGTAACGCG                         GCAGCTCAAGGTCGCCGTGGCCGATGAGGACTATGCGCTTGCTGCAAAGCT
genomic: TCCGCGCTTGACGCTGCGCAGACCTGGGAGCGCCTGAGCCTTGTAACGCGgtaagtctag ... cctcgcacagGCAGCTCAAGGTCGCCGTGGCCGATGAGGACTATGCGCTTGCTGCAAAGCT