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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGACAGCCTGCCGCCCATACTCCAGTACGCGCTGGGGCAGGTGGCGAAGCTGCGCACGGGCACCACTCAGGAGCAGCTGCAGACCATCCTCAACCTTGgtgagagccacggcggcaatcggtcttgcctcaatcgccactgcccgtgctcgccaacgccgcttgcctgatactttggcagtggattgactagaaaggt...

Basic information

species Chlamydomonas reinhardtii
transcript EDP06247
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10773138|gb|AV623961.1|AV623961
EST:     GCTGCGCACGGGCACCACTCAGGAGCAGCTGCAGACCATCCTCAACCTTG                         GCGAGGCGGGTGAGCCCGCGGTGATCCCTGACCTGGCCTCCTGCCTGTCCA
genomic: GCTGCGCACGGGCACCACTCAGGAGCAGCTGCAGACCATCCTCAACCTTGgtgagagcca ... ccggttgcagGCGAGGCGGGTGAGCCCGCGGTGATCCCTGACCTGGCCTCCTGCCTGTCCA
EST: gi|161810414|gb|FC098244.1|FC098244
EST:     GCTGCGCACGGGCACCACTCAGGAGCAGCTGCAGACCATCCTCAACCTTG                         GCGAGGCAGGTGAGCCCGCGGTGATCCCTGACCTGGCCTCCTGCCTGTCCA
genomic: GCTGCGCACGGGCACCACTCAGGAGCAGCTGCAGACCATCCTCAACCTTGgtgagagcca ... ccggttgcagGCGAGGCGGGTGAGCCCGCGGTGATCCCTGACCTGGCCTCCTGCCTGTCCA
EST: gi|9458402|gb|BE452222.1|BE452222
EST:     GCTGCGCACGGGCACCACTCAGGAGCAGCTGCAGACCATCCTCAACCTTG                         GCGAGGCGGGTGAGCCCGCGGTGATCCCTGACCTGGCCTCCTGCCTGTCCA
genomic: GCTGCGCACGGGCACCACTCAGGAGCAGCTGCAGACCATCCTCAACCTTGgtgagagcca ... ccggttgcagGCGAGGCGGGTGAGCCCGCGGTGATCCCTGACCTGGCCTCCTGCCTGTCCA
EST: gi|10773747|gb|AV624570.1|AV624570
EST:     GCTGCGCACGGGCACCACTCAGGAGCAGCTGCAGACCATCCTCAACCTTG                         GCGAGGCGGGTGAGCCCGCGGTGATCCCTGATCTGGCCTCCTGCCTGTCCA
genomic: GCTGCGCACGGGCACCACTCAGGAGCAGCTGCAGACCATCCTCAACCTTGgtgagagcca ... ccggttgcagGCGAGGCGGGTGAGCCCGCGGTGATCCCTGACCTGGCCTCCTGCCTGTCCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCGACAGCCTGCCGCCCATACTCCAGTACGCGCTGGGGCAGGTGGCGAAGCTGCGCACGGGCACCACTCAGGAGCAGCTGCAGACCATCCTCAACCTTGgtgagagccacggcggcaatcggtcttgcctcaatcgccactgcccgtgctcgccaacgccgcttgcctgatactttggcagtggattgactagaaaggt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcggtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcccgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtggat