1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtctagaatgtgctcaaaaatagatgaacctgtgacagttggagagttgaccgtgttttggtcgcataccacggttccctcgcacagGCAGCTCAAGGTCGCCGTGGCCGATGAGGACTATGCGCTTGCTGCAAAGCTTCGAGACGAGCAGAAG
species | Chlamydomonas reinhardtii |
transcript | EDP06247 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCGCGCTTGACGCTGCGCAGACCTGGGAGCGCCTGAGCCTTGTAACGCG GCAGCTCAAGGTCGCCGTGGCCGATGAGGACTATGCGCTTGCTGCAAAGCTEST: gi|10773138|gb|AV623961.1|AV623961
genomic: TCCGCGCTTGACGCTGCGCAGACCTGGGAGCGCCTGAGCCTTGTAACGCGgtaagtctag ... cctcgcacagGCAGCTCAAGGTCGCCGTGGCCGATGAGGACTATGCGCTTGCTGCAAAGCT
EST: TCCGCGCTTGACGCTGCGCAGACCTGGGAGCGCCTGAGCCTTGTAACGCG GCAGCTCAAGGTCGCCGTGGCCGATGAGGACTATGCGCTTGCTGCAAAGCTEST: gi|161810414|gb|FC098244.1|FC098244
genomic: TCCGCGCTTGACGCTGCGCAGACCTGGGAGCGCCTGAGCCTTGTAACGCGgtaagtctag ... cctcgcacagGCAGCTCAAGGTCGCCGTGGCCGATGAGGACTATGCGCTTGCTGCAAAGCT
EST: TCCGCGCTTGACGCTGCGCAGACCTGGGAGCGCCTGAGCCTTGTAACGCG GCAGCTCAAGGTCGCCGTGGCCGATGAGGACTATGCGCTTGCGGCAAAGCTEST: gi|10775159|gb|AV625982.1|AV625982
genomic: TCCGCGCTTGACGCTGCGCAGACCTGGGAGCGCCTGAGCCTTGTAACGCGgtaagtctag ... cctcgcacagGCAGCTCAAGGTCGCCGTGGCCGATGAGGACTATGCGCTTGCTGCAAAGCT
EST: TCCGCGCTTGACGCTGCGCAGACCTGGGAGCGCCTGAGCCTTGTAACGCG GCAGCTCAAGGTCGCCGTGGCCGATGAGGACTATGCGCTTGCTGCAAAGCTEST: gi|10773747|gb|AV624570.1|AV624570
genomic: TCCGCGCTTGACGCTGCGCAGACCTGGGAGCGCCTGAGCCTTGTAACGCGgtaagtctag ... cctcgcacagGCAGCTCAAGGTCGCCGTGGCCGATGAGGACTATGCGCTTGCTGCAAAGCT
EST: TCCGCGCTTGACGCTGCGCAGACCTGGGAGCGCCTGAGCCTTGTAACGCG GCAGCTCAAGGTCGCCGTGGCCGATGAGGACTATGCGCTTGCTGCAAAGCT
genomic: TCCGCGCTTGACGCTGCGCAGACCTGGGAGCGCCTGAGCCTTGTAACGCGgtaagtctag ... cctcgcacagGCAGCTCAAGGTCGCCGTGGCCGATGAGGACTATGCGCTTGCTGCAAAGCT
tgacagttggagagttgaccgtgttttggtcgcataccacggttccctcgcacagGCAGCTCAAGGTCGCCGTGGCCGATGAGGACTATGCGCTTGCTGCAAAGCTTCGAGACGAGCAGAAG
agttgac putative branch site (score: 4)
ttccctcgc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtctagaatgtgctcaaaaatagatgaacctgtgacagttggagagttgaccgtgttttggtcgcataccacggttccctcgcacagGCAGCTCAAGGTCGCCGTGGCCGATGAGGACTATGCGCTTGCTGCAAAGCTTCGAGACGAGCAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG