1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agcagcagcagaatccgcgacacactgcgtgcatcattgctcactttgcagctgaccccgtgtggctgagtctgaccccggaccccggaccccgccgcagGGACCCGCGCGTGAACGAGCTGATGCAGGAGGGCTGCATGTACATGCGCTCGCCCGCCACCTACGACAAGGCGCTGGGCGTGTTCAGCCAGATGATCCAG
species | Chlamydomonas reinhardtii |
transcript | EDP06247 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGGCAGACACCGCGGAGAAGGCCATGTGGGCCATCTTCATGAAGAACAA GGACCCGCGCGTGAACGAGCTGATGCAGGAGGGCTGCATGTACATGCGCTCEST: gi|161810414|gb|FC098244.1|FC098244
genomic: CTGGCAGACACCGCGGAGAAGGCCATGTGGGCCATCTTCATGAAGAACAAgtgagcgggg ... cccgccgcagGGACCCGCGCGTGAACGAGCTGATGCAGGAGGGCTGCATGTACATGCGCTC
EST: CTGGCAGACACCGCGGAGAAGGCCATGTGGGCCATCTTCATGAAGAACAA GGACCCGCGCGTGAACGAGCTGATGCAGGAGGGCTGCATGTACATGCGCTCEST: gi|9458402|gb|BE452222.1|BE452222
genomic: CTGGCAGACACCGCGGAGAAGGCCATGTGGGCCATCTTCATGAAGAACAAgtgagcgggg ... cccgccgcagGGACCCGCGCGTGAACGAGCTGATGCAGGAGGGCTGCATGTACATGCGCTC
EST: CTGGCAGACACCGCGGAGAAGGCCATGTGGGCCATCTTCATGAAGAACAA GGACCCGCGCGTGAACGAGCTGATGCAGGAGGGCTGCATGTACATGCGCTCEST: gi|49466532|gb|BP094445.1|BP094445
genomic: CTGGCAGACACCGCGGAGAAGGCCATGTGGGCCATCTTCATGAAGAACAAgtgagcgggg ... cccgccgcagGGACCCGCGCGTGAACGAGCTGATGCAGGAGGGCTGCATGTACATGCGCTC
EST: CGCGGAGAAGGCCATGTGGGCCATCTTCATGAAGAACAA GGACCCGCGCGTGAACGAGCTGATGCAGGAGGGCTGCATGTACATGCGCTC
genomic: CGCGGAGAAGGCCATGTGGGCCATCTTCATGAAGAACAAgtgagcgggg ... cccgccgcagGGACCCGCGCGTGAACGAGCTGATGCAGGAGGGCTGCATGTACATGCGCTC
ttgcagctgaccccgtgtggctgagtctgaccccggaccccggaccccgccgcagGGACCCGCGCGTGAACGAGCTGATGCAGGAGGGCTGCATGTACATGCGCTCGCCCGCCACCTACGACAAGGCGCTGGGCGTGTTCAGCCAGATGATCCAG
gtctgac putative branch site (score: 3)
ccccgcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcagcagcagaatccgcgacacactgcgtgcatcattgctcactttgcagctgaccccgtgtggctgagtctgaccccggaccccggaccccgccgcagGGACCCGCGCGTGAACGAGCTGATGCAGGAGGGCTGCATGTACATGCGCTCGCCCGCCACCTACGACAAGGCGCTGGGCGTGTTCAGCCAGATGATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
agcagca
- - - - - - - - - -acacact
- - - - - - - - - - - - - -cgtgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgtgtg