1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gcagggcctgtgggagcgcgcccgcactggggcgcccgcctgcccacagcaccgatgttgtctgcgacaacactagccctgcactggttccattacgcagGTACCTGATCTTTGTGTTCTACCGGTTGTGGCAGAACGAGACGCGCATCAGCGGGACGCCGTGGAACGCCATCGGCATCACACCCATCTTCCAAGTGGCG
species | Chlamydomonas reinhardtii |
transcript | EDP04566 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGGCGGGCTTCTACATCAGCTGNGTGCTGCTGCGGAATATCTTTTACCC GTACCTGATCTTTGTGTTCTACCGGTTGTGGCAGAACGAGACGCGCATCAGEST: gi|14235406|gb|BG854222.1|BG854222
genomic: GAGGCGGGCTTCTACATCAGCTGGGTGCTGCTGCGGAATATCTTTTACCCgtgagttccc ... cattacgcagGTACCTGATCTTTGTGTTCTACCGGTTGTGGCAGAACGAGACGCGCATCAG
EST: GAGGCGGGCTTCTACATCAGCTGGGTGCTGCTGCGGAATATCTTTTACCC GTACCTGATCTTTGTGTTCTACCGGTTGTGGCAGAACGAGACGCGCATCAGEST: gi|161821799|gb|FC110263.1|FC110263
genomic: GAGGCGGGCTTCTACATCAGCTGGGTGCTGCTGCGGAATATCTTTTACCCgtgagttccc ... cattacgcagGTACCTGATCTTTGTGTTCTACCGGTTGTGGCAGAACGAGACGCGCATCAG
EST: GAGGCGGGCTTCTACATCAGCTGGGTGCTGCTGCGGAACATCTTTTACCC GTACCTGATCTTCGTGTTCTATCGGTTGTGGCAGAACGAGACGCGCATCAGEST: gi|10191372|gb|BE761448.1|BE761448
genomic: GAGGCGGGCTTCTACATCAGCTGGGTGCTGCTGCGGAATATCTTTTACCCgtgagttccc ... cattacgcagGTACCTGATCTTTGTGTTCTACCGGTTGTGGCAGAACGAGACGCGCATCAG
EST: GAGGCGGGCTTCTACATCAGCTGGGTGCTGCTGCGGAATATCTTTTACCC GTACCTGATCTTTGTGTTCTACCGGTTGTGGCAGAACGAGACGCGCATCAG
genomic: GAGGCGGGCTTCTACATCAGCTGGGTGCTGCTGCGGAATATCTTTTACCCgtgagttccc ... cattacgcagGTACCTGATCTTTGTGTTCTACCGGTTGTGGCAGAACGAGACGCGCATCAG
acagcaccgatgttgtctgcgacaacactagccctgcactggttccattacgcagGTACCTGATCTTTGTGTTCTACCGGTTGTGGCAGAACGAGACGCGCATCAGCGGGACGCCGTGGAACGCCATCGGCATCACACCCATCTTCCAAGTGGCG
ttccatt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcagggcctgtgggagcgcgcccgcactggggcgcccgcctgcccacagcaccgatgttgtctgcgacaacactagccctgcactggttccattacgcagGTACCTGATCTTTGTGTTCTACCGGTTGTGGCAGAACGAGACGCGCATCAGCGGGACGCCGTGGAACGCCATCGGCATCACACCCATCTTCCAAGTGGCG
- - -gcctgtg
- - - - - - - - - - cccgcac
- - - - - - - - - - - - - - - - - - - - -gcccaca
- - - - - - - - - - - - - - - - - - - - - - - - -caccgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgcac