1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctgaggcagaagcatgcgggtgcgtgccgctgcgttctttccggcccgctacctgctgaccctctcggcctccccggttgtctgctgcgccccaccccagGACATCTTCAACCTGGCATTCATTTTCTGGCTCAACATCGCAAACTTCCTCTTCCTGCACACGGGGCGGCACTTCTACTTATTCTTCTACTCGACAATGG
species | Chlamydomonas reinhardtii |
transcript | EDP04566 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCGGAAAGAAAACCGAGTCCGGTCGGCTTCCAGCGGTCGTGGTGTACCAT GACATCTTCAACCTGGCATTCATTTTCTGGCTCAACATCGCAAACTTCCTCEST: gi|10191373|gb|BE761449.1|BE761449
genomic: GCGGAAAGAAAACCGAGTCCGGTCGGCTTCCAGCGGTCGTGGTGTACCATgtgggtgcgg ... cccaccccagGACATCTTCAACCTGGCATTCATTTTCTGGCTCAACATCGCAAACTTCCTC
EST: GCGGAAAGAAAACCGAGTCCGGTCGGCTTCCAGCGGTCGTGGTGTACCAT GACATCTTCAACCTGGCATTCATTTTCTGGCTCAACATCGCAAACTTCCTCEST: gi|161821799|gb|FC110263.1|FC110263
genomic: GCGGAAAGAAAACCGAGTCCGGTCGGCTTCCAGCGGTCGTGGTGTACCATgtgggtgcgg ... cccaccccagGACATCTTCAACCTGGCATTCATTTTCTGGCTCAACATCGCAAACTTCCTC
EST: GCGGAAAGAAAACCGAGTCCGGTCGGCTTCCAGCGGTGGTGGTGTACCAT GACATCTTCAACCTGGCATTCATTTTCTGGCTCAACATCGCAAACTTCCTC
genomic: GCGGAAAGAAAACCGAGTCCGGTCGGCTTCCAGCGGTCGTGGTGTACCATgtgggtgcgg ... cccaccccagGACATCTTCAACCTGGCATTCATTTTCTGGCTCAACATCGCAAACTTCCTC
ccgctacctgctgaccctctcggcctccccggttgtctgctgcgccccaccccagGACATCTTCAACCTGGCATTCATTTTCTGGCTCAACATCGCAAACTTCCTCTTCCTGCACACGGGGCGGCACTTCTACTTATTCTTCTACTCGACAATGG
tgctgac putative branch site (score: 2)
ccccacccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgaggcagaagcatgcgggtgcgtgccgctgcgttctttccggcccgctacctgctgaccctctcggcctccccggttgtctgctgcgccccaccccagGACATCTTCAACCTGGCATTCATTTTCTGGCTCAACATCGCAAACTTCCTCTTCCTGCACACGGGGCGGCACTTCTACTTATTCTTCTACTCGACAATGG
- -aggcaga
- - - - - - - - - - tgcgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtctg