1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtcctccttagcagcgcaggttgcaggcagatacaccacaagccctcgacccaaatctactatcaacatatgggtttgcacctgtactttctcttcgcagCGCTCTACCTGCTGATCCCCTACCACTATCCCAACTACGGTTGGTGCAT
species | Chlamydomonas reinhardtii |
transcript | EDP04566 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCGGTCCGTCAAGTCGCCCATGGTCATCCTCATCCACCACGTCATCACAG CGCTCTACCTGCTGATCCCCTACCACTATCCCAACTACGGTTGGTGCATEST: gi|161821799|gb|FC110263.1|FC110263
genomic: GCGGTCCGTCAAGTCGCCCATGGTCATCCTCATCCACCACGTCATCACAGgtgtgtgtct ... ctcttcgcagCGCTCTACCTGCTGATCCCCTACCACTATCCCAACTACGGTTGGTGCAT
EST: GCGGTCCGTCAAGTCGCCCATGGTCATCCTCATCCACCACGTCATCACAG CGCTGTACCTGCTGATCCCCTACCACTATCCCAACTACGGTTGGTGCAT
genomic: GCGGTCCGTCAAGTCGCCCATGGTCATCCTCATCCACCACGTCATCACAGgtgtgtgtct ... ctcttcgcagCGCTCTACCTGCTGATCCCCTACCACTATCCCAACTACGGTTGGTGCAT
tcgacccaaatctactatcaacatatgggtttgcacctgtactttctcttcgcagCGCTCTACCTGCTGATCCCCTACCACTATCCCAACTACGGTTGGTGCAT
cctgtactttctcttc CT-rich tract
aaatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcctccttagcagcgcaggttgcaggcagatacaccacaagccctcgacccaaatctactatcaacatatgggtttgcacctgtactttctcttcgcagCGCTCTACCTGCTGATCCCCTACCACTATCCCAACTACGGTTGGTGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - aggcaga
- - - - - - - - - - - - - - - - acaccac
- - - - - - - - - - - - - - - - - - - - - - - - acccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtactt