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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagccctggtgtgtcgcaagggccagcagcgaggccacctgcctacaactgagtcccatgcttcagcatggcgcgggtagagcttattgacctttcatgcggtttctgctgcacgagttggagtcgttcgcgcggtcgagtgcacaaggcctgccattctaacgcgcatgcacttcttccgcgtccccgccaacgcagCTGTACGTGGCGATCGTGCCGCGGTCCGTCAAGTCGCCCATGGTCATCCTCATCCACCACGTCATCACAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04566
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10191373|gb|BE761449.1|BE761449
EST:     ACTTCTACTTATTCTTCTACTCGACAATGGTGTACTTCGTGGCAGACCTG                         CTGTACGTGGCGATCGTGCCGCGGTCCGTCAAGTCGCCCATGGTCATCCTC
genomic: ACTTCTACTTATTCTTCTACTCGACAATGGTGTACTTCGTGGCAGACCTGgtgagccctg ... gccaacgcagCTGTACGTGGCGATCGTGCCGCGGTCCGTCAAGTCGCCCATGGTCATCCTC
EST: gi|161821799|gb|FC110263.1|FC110263
EST:     ACTTCTACTTATTCTTCTACTCGACCATGGTGTACTTCGTGGCAGACCTG                         CTGTACGTGGCGATTGTGCCGCGGTCCGTCAAGTCGCCCATGGTCATCCTC
genomic: ACTTCTACTTATTCTTCTACTCGACAATGGTGTACTTCGTGGCAGACCTGgtgagccctg ... gccaacgcagCTGTACGTGGCGATCGTGCCGCGGTCCGTCAAGTCGCCCATGGTCATCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaaggcctgccattctaacgcgcatgcacttcttccgcgtccccgccaacgcagCTGTACGTGGCGATCGTGCCGCGGTCCGTCAAGTCGCCCATGGTCATCCTCATCCACCACGTCATCACAG
             ttctaac  putative branch site (score: 1)
 tccccgcc  putative PPT
 attctaa  TA-rich tract