1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTGTACGTGGCGATCGTGCCGCGGTCCGTCAAGTCGCCCATGGTCATCCTCATCCACCACGTCATCACAGgtgtgtgtctcgcgcatgtcgtacggcgaattatgttcaggccgacatggccgcgcgttcgttggtacgatcctacatgaagccatgaacgagagagcgc...
species | Chlamydomonas reinhardtii |
transcript | EDP04566 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCGGTCCGTCAAGTCGCCCATGGTCATCCTCATCCACCACGTCATCACAG CGCTCTACCTGCTGATCCCCTACCACTATCCCAACTACGGTTGGTGCATEST: gi|161821799|gb|FC110263.1|FC110263
genomic: GCGGTCCGTCAAGTCGCCCATGGTCATCCTCATCCACCACGTCATCACAGgtgtgtgtct ... ctcttcgcagCGCTCTACCTGCTGATCCCCTACCACTATCCCAACTACGGTTGGTGCAT
EST: GCGGTCCGTCAAGTCGCCCATGGTCATCCTCATCCACCACGTCATCACAG CGCTGTACCTGCTGATCCCCTACCACTATCCCAACTACGGTTGGTGCAT
genomic: GCGGTCCGTCAAGTCGCCCATGGTCATCCTCATCCACCACGTCATCACAGgtgtgtgtct ... ctcttcgcagCGCTCTACCTGCTGATCCCCTACCACTATCCCAACTACGGTTGGTGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTACGTGGCGATCGTGCCGCGGTCCGTCAAGTCGCCCATGGTCATCCTCATCCACCACGTCATCACAGgtgtgtgtctcgcgcatgtcgtacggcgaattatgttcaggccgacatggccgcgcgttcgttggtacgatcctacatgaagccatgaacgagagagcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtctcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttcgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaac