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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtatcttgcagtgagctcttgggagcgaccgggcgcaatcgcgagtggacctatagtcgcgcacgctcattttatgtctatgcgacgtagGGTCCAACGGGGCCGTCACCAATGTGCGCGCTGACGCTTCAACACAATCGGCTGATGACGGGGGCGGAAAGAAAACCGAGTCCGGTCGGCTTCCAGCGGT

Basic information

species Chlamydomonas reinhardtii
transcript EDP04566
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10780846|gb|AV637526.1|AV637526
EST:     TTGCGATAGCGGTTCGTAGCTCGGGAAGCAAATCGCCGATATGACGCAAG                         GGTCCAACGGGGCCGTCACCAATGTGCGCGCTGACGCTTCAACACAATCGG
genomic: TTGCGATAGCGGTTCGTAGCTCGGGAAGCAAATCGCCGATATGACGCAAGgtgggtatct ... tgcgacgtagGGTCCAACGGGGCCGTCACCAATGTGCGCGCTGACGCTTCAACACAATCGG
EST: gi|10191373|gb|BE761449.1|BE761449
EST:     TTGCGATAGCGGTTCGTAGCTCGGGAAGCAAATCGCCGATATGACGCAAG                         GGTCCAACGGGGCCGTCACCAATGTGCGCGCTGACGCTTCAACACAATCGG
genomic: TTGCGATAGCGGTTCGTAGCTCGGGAAGCAAATCGCCGATATGACGCAAGgtgggtatct ... tgcgacgtagGGTCCAACGGGGCCGTCACCAATGTGCGCGCTGACGCTTCAACACAATCGG
EST: gi|49465856|gb|BP093769.1|BP093769
EST:     TTGCGATAGCGGTTCGTAGCTCGGGAAGCAAATCGCCGATATGACGCAAG                         GGTCCAACGGGGCCGTCACCAATGTGCGCGCTGACGCTTCAACACAATCGG
genomic: TTGCGATAGCGGTTCGTAGCTCGGGAAGCAAATCGCCGATATGACGCAAGgtgggtatct ... tgcgacgtagGGTCCAACGGGGCCGTCACCAATGTGCGCGCTGACGCTTCAACACAATCGG
EST: gi|161821799|gb|FC110263.1|FC110263
EST:     TTGCGATAGCGGTTCGTAGCTCGGGAAGCAAATCGCCGATATGACGCAAG                         GGTCCAACGGGGCCGTCACCAATGTGCGCGCTGACGCTTCAACACAATCGG
genomic: TTGCGATAGCGGTTCGTAGCTCGGGAAGCAAATCGCCGATATGACGCAAGgtgggtatct ... tgcgacgtagGGTCCAACGGGGCCGTCACCAATGTGCGCGCTGACGCTTCAACACAATCGG
EST: gi|6543294|gb|AV389078.1|AV389078
EST:     TTGCGATAGCGGTTCGTAGCTCGGGAAGCAAATCGCCGATATGACGCAAG                         GGTCCAACGGGGCCGTCACCAATGTGCGCGCTGACGCTTCAACACAATCGG
genomic: TTGCGATAGCGGTTCGTAGCTCGGGAAGCAAATCGCCGATATGACGCAAGgtgggtatct ... tgcgacgtagGGTCCAACGGGGCCGTCACCAATGTGCGCGCTGACGCTTCAACACAATCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatcgcgagtggacctatagtcgcgcacgctcattttatgtctatgcgacgtagGGTCCAACGGGGCCGTCACCAATGTGCGCGCTGACGCTTCAACACAATCGGCTGATGACGGGGGCGGAAAGAAAACCGAGTCCGGTCGGCTTCCAGCGGT
                               tcattttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgggtatcttgcagtgagctcttgggagcgaccgggcgcaatcgcgagtggacctatagtcgcgcacgctcattttatgtctatgcgacgtagGGTCCAACGGGGCCGTCACCAATGTGCGCGCTGACGCTTCAACACAATCGGCTGATGACGGGGGCGGAAAGAAAACCGAGTCCGGTCGGCTTCCAGCGGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA