1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GGCTATGTTCCCGGTGCTGTTCCTGCTGGGCCCCGAGGGCTTTGGCCACATCAACCAATTCAgtgagtccacgtgttgtggtggtgtgtgtgtggggggggggggagtctccatgcccccgggtgtgctggcgtccatggagtgtaagcccatcgtggggtc...
species | Chlamydomonas reinhardtii |
transcript | EDO99075 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GGTGCTGTTCCTGCTGGGCCCCGAGGGCTTTGGCCACATCAACCAATTCA ACTCTGCCATCGCCCACGCCATCCTGGACCTTGCCTCCAAGAACGCTTGGAEST: gi|10784145|gb|AV640817.1|AV640817
genomic: GGTGCTGTTCCTGCTGGGCCCCGAGGGCTTTGGCCACATCAACCAATTCAgtgagtccac ... tttgctgcagACTCTGCCATCGCCCACGCCATCCTGGACCTTGCCTCCAAGAACGCTTGGA
EST: GGTGCTGTTCCTGCTGGGCCCCGAGGGCTTTGGCCACATCAACCAATTCA ACTCTGCCATCGCCCACGCCATCCTGGACCTTGCCTCCAAGAACGCTTGGA
genomic: GGTGCTGTTCCTGCTGGGCCCCGAGGGCTTTGGCCACATCAACCAATTCAgtgagtccac ... tttgctgcagACTCTGCCATCGCCCACGCCATCCTGGACCTTGCCTCCAAGAACGCTTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTATGTTCCCGGTGCTGTTCCTGCTGGGCCCCGAGGGCTTTGGCCACATCAACCAATTCAgtgagtccacgtgttgtggtggtgtgtgtgtggggggggggggagtctccatgcccccgggtgtgctggcgtccatggagtgtaagcccatcgtggggtc
- - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggagtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtgtaa