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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgcctatcgcataccgtgctgcggccttgccattatagcgaggccatgccgtgaaccctttttcctcctgctcctcctcctgctaattctgccgctgcagTATCGGCACGATCGTGTGGGGCACCACGGCCGCGCTGTCCAAGGGATACGTCCGTGTCATTTTCTTCCTGATGGGCCTGTGCTACGGCATCTACACATTC

Basic information

species Chlamydomonas reinhardtii
transcript EDO99075
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49465573|gb|BP093486.1|BP093486
EST:     GGTCTGGCGAACGACTATAACAAGCGTACCATGGGTCTGCTGGTGTCAGA                         TATCGGCACGATCGTGTGGGGCACCACGGCCGCGCTGTCCAAGGGATACGT
genomic: GGTCTGGCGAACGACTATAACAAGCGTACCATGGGTCTGCTGGTGTCAGAgtgagtctgt ... gccgctgcagTATCGGCACGATCGTGTGGGGCACCACGGCCGCGCTGTCCAAGGGATACGT
EST: gi|10785393|gb|AV642065.1|AV642065
EST:     GGTCTGGCGAACGACTATAACAAGCGTACCATGGGTCTGCTGGTGTCAGA                         TATCGGCACGATCGTGTGGGGCACCACGGCC
genomic: GGTCTGGCGAACGACTATAACAAGCGTACCATGGGTCTGCTGGTGTCAGAgtgagtctgt ... gccgctgcagTATCGGCACGATCGTGTGGGGCACCACGGCC
EST: gi|10793900|gb|AV631266.1|AV631266
EST:     GGTCTGGCGAACGACTATAACAAGCGTACCATGGGTCTGCTGGTGTCAGA                         TATCGGCACGATCGTGTGGGGCACCACGG
genomic: GGTCTGGCGAACGACTATAACAAGCGTACCATGGGTCTGCTGGTGTCAGAgtgagtctgt ... gccgctgcagTATCGGCACGATCGTGTGGGGCACCACGG
EST: gi|10784145|gb|AV640817.1|AV640817
EST:     TACCATGGGTCTGCTGGTGTCAGA                         TATCGGCACGATCGTGTGGGGCACCACGGCCGCGCTGTCCAAGGGATACGT
genomic: TACCATGGGTCTGCTGGTGTCAGAgtgagtctgt ... gccgctgcagTATCGGCACGATCGTGTGGGGCACCACGGCCGCGCTGTCCAAGGGATACGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgccgtgaaccctttttcctcctgctcctcctcctgctaattctgccgctgcagTATCGGCACGATCGTGTGGGGCACCACGGCCGCGCTGTCCAAGGGATACGTCCGTGTCATTTTCTTCCTGATGGGCCTGTGCTACGGCATCTACACATTC
                                   tgctaat  putative branch site (score: 2)
          ccctttttcctcctgc  CT-rich tract
                                      taattct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cgcctatcgcataccgtgctgcggccttgccattatagcgaggccatgccgtgaaccctttttcctcctgctcctcctcctgctaattctgccgctgcagTATCGGCACGATCGTGTGGGGCACCACGGCCGCGCTGTCCAAGGGATACGTCCGTGTCATTTTCTTCCTGATGGGCCTGTGCTACGGCATCTACACATTC

- - - -cgcatac