1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...caacatgttgggttctgcgatagacaccaaccctgctgtgccgggcatcgtggctgaccctgtcctggcaatctactcctggcgcggttcacgcccacagGAGTTTGACGAACCTGCGGTGATCTACTCATCCAACGGCAACAAGACCGTGTGGCTTCGTTACGCGGAGTGGCTGCTGACCTGCC
species | Chlamydomonas reinhardtii |
transcript | EDO99075 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCGAGATGATCAAGTTCATCATCGAGTATTTCCAT GAGTTTGACGAACCTGCGGTGATCTACTCATCCAACGGCAACAAGACCGTGEST: gi|10793900|gb|AV631266.1|AV631266
genomic: TCGAGATGATCAAGTTCATCATCGAGTATTTCCATgtgagcagct ... acgcccacagGAGTTTGACGAACCTGCGGTGATCTACTCATCCAACGGCAACAAGACCGTG
EST: ATGATCAAGTTCATCATCGAGTATTTCCAT GAGTTTGACGAACCTGCGGTGATCTACTCATCCAACGGCAACAAGACCGTGEST: gi|6550812|gb|AV396596.1|AV396596
genomic: ATGATCAAGTTCATCATCGAGTATTTCCATgtgagcagct ... acgcccacagGAGTTTGACGAACCTGCGGTGATCTACTCATCCAACGGCAACAAGACCGTG
EST: ATGATCAAGTTCATCATCGAGTATTTCCAT GAGTTTGACGAACCTGCGGTGATCTACTCATCCAACGGCAACAAGACCGTG
genomic: ATGATCAAGTTCATCATCGAGTATTTCCATgtgagcagct ... acgcccacagGAGTTTGACGAACCTGCGGTGATCTACTCATCCAACGGCAACAAGACCGTG
catcgtggctgaccctgtcctggcaatctactcctggcgcggttcacgcccacagGAGTTTGACGAACCTGCGGTGATCTACTCATCCAACGGCAACAAGACCGTGTGGCTTCGTTACGCGGAGTGGCTGCTGACCTGCC
ggctgac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caacatgttgggttctgcgatagacaccaaccctgctgtgccgggcatcgtggctgaccctgtcctggcaatctactcctggcgcggttcacgcccacagGAGTTTGACGAACCTGCGGTGATCTACTCATCCAACGGCAACAAGACCGTGTGGCTTCGTTACGCGGAGTGGCTGCTGACCTGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - -ttgggtt
- - - - - - - - - - - -acaccaa