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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgagagctatcgagagcactcgaggggactacagttttgaggggagggctttgtgacggcagggtttgtgaagcgtgcaacggagatgcgcaacacagctcaggccagtcggtacctcaaccacccttcttcctctcgctgactcctgtgcgcatgttgcgaccaccacagGCGTCATGCCCAGCCCCGCCCCCGGCGGCCGCGTGGGCACCAACCCGCTGTTTGGCTCTGCGCCCTCTCCGCTGAGCTCGCAGCCCGGCATCAGCCCTGG

Basic information

species Chlamydomonas reinhardtii
transcript EDO99075
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10127565|gb|BE726269.1|BE726269
EST:     GAGTCAGCCCTCCGCCATGAGCGCCGGCGGCGCCATGCAGGCCATGGGTG                         GCGTCATGCCCAGCCCCGCCCCCGGCGGCCGCGTGGGCACCAACCCGCTGT
genomic: GAGTCAGCCCTCCGCCATGAGCGCCGGCGGCGCCATGCAGGCCATGGGTGgtgagtgaga ... accaccacagGCGTCATGCCCAGCCCCGCCCCCGGCGGCCGCGTGGGCACCAACCCGCTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaaccacccttcttcctctcgctgactcctgtgcgcatgttgcgaccaccacagGCGTCATGCCCAGCCCCGCCCCCGGCGGCCGCGTGGGCACCAACCCGCTGTTTGGCTCTGCGCCCTCTCCGCTGAGCTCGCAGCCCGGCATCAGCCCTGG
                    cgctgac  putative branch site (score: 3)