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GCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGGgtgagttgtggggccactgaaccttttccgacagcgacttcgcaccgtgtcgcggtcggccgcgtctctcttccagctcttgctgttgtccatgtttttc...
species | Chlamydomonas reinhardtii |
transcript | EDO99075 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGG ATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACCEST: gi|10783876|gb|AV640548.1|AV640548
genomic: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGGgtgagttgtg ... cctttcgcagATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACC
EST: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGG ATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACCEST: gi|10784787|gb|AV641459.1|AV641459
genomic: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGGgtgagttgtg ... cctttcgcagATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACC
EST: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGG ATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACCEST: gi|6549790|gb|AV395574.1|AV395574
genomic: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGGgtgagttgtg ... cctttcgcagATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACC
EST: AATCCAACGGAACAAATGCCGAGAAGTAGGCTGCCAACATTCTGCAGTGG ATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACCEST: gi|10786765|gb|AV643437.1|AV643437
genomic: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGGgtgagttgtg ... cctttcgcagATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACC
EST: ATCCAACGGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGG ATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACCEST: gi|49467747|gb|BP095608.1|BP095608
genomic: ATCCAACGG-AACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGGgtgagttgtg ... cctttcgcagATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACC
EST: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGG ATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACCEST: gi|10791451|gb|AV628817.1|AV628817
genomic: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGGgtgagttgtg ... cctttcgcagATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACC
EST: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGG ATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACCEST: gi|22051592|gb|BQ809748.1|BQ809748
genomic: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGGgtgagttgtg ... cctttcgcagATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACC
EST: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGG ATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACCEST: gi|10783639|gb|AV640311.1|AV640311
genomic: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGGgtgagttgtg ... cctttcgcagATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACC
EST: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGG ATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACCEST: gi|49466656|gb|BP094569.1|BP094569
genomic: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGGgtgagttgtg ... cctttcgcagATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACC
EST: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGG ATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACCEST: gi|10786863|gb|AV643535.1|AV643535
genomic: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGGgtgagttgtg ... cctttcgcagATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACC
EST: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGG ATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACCEST: gi|10787434|gb|AV644106.1|AV644106
genomic: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGGgtgagttgtg ... cctttcgcagATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACC
EST: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGG ATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACCEST: gi|49468331|gb|BP096192.1|BP096192
genomic: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGGgtgagttgtg ... cctttcgcagATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACC
EST: AATCCAACGGAACAAATGCCGAGAAGTNGGCTGCCAACATTCTGCAGTGG ATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACCEST: gi|10784021|gb|AV640693.1|AV640693
genomic: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGGgtgagttgtg ... cctttcgcagATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACC
EST: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGG ATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACCEST: gi|10785578|gb|AV642250.1|AV642250
genomic: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGGgtgagttgtg ... cctttcgcagATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACC
EST: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGG ATTACTTTTGCGCTTTCAGCGCTCEST: gi|6550812|gb|AV396596.1|AV396596
genomic: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGGgtgagttgtg ... cctttcgcagATTACTTTTGCGCTTTCAGCGCTC
EST: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGG ATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACC
genomic: AATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGGgtgagttgtg ... cctttcgcagATTACTTTTGCGCTTTCAGCGCTCTGCCTGATGTTCTACGGCTACCAGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTGGCTTAAATCCAACGGAACAAATGCCGAGAAGTTGGCTGCCAACATTCTGCAGTGGgtgagttgtggggccactgaaccttttccgacagcgacttcgcaccgtgtcgcggtcggccgcgtctctcttccagctcttgctgttgtccatgtttttc
- - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtccat